Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10499
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces...    63   2e-11
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    46   3e-06
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch...    39   6e-04
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    38   0.001
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...    32   0.052
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    32   0.069
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    31   0.16 
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    29   0.48 
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    28   0.84 
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch...    27   1.5  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.0  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    27   2.6  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   3.4  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    26   4.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.0  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   7.9  

>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 77

 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 26/48 (54%), Positives = 40/48 (83%)
 Frame = +3

Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 251
           MSKA  P+LKK++D+++ ++LN  R V GVLRG+D F+N+VL++S+EE
Sbjct: 1   MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEE 48



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 14/26 (53%), Positives = 22/26 (84%)
 Frame = +2

Query: 257 DGQRNNVGMVVIRGNSIIMLESLDRL 334
           DG++  +G V IRGNS+IM+E+LD++
Sbjct: 51  DGEKVKIGSVAIRGNSVIMIETLDKM 76


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 17/43 (39%), Positives = 29/43 (67%)
 Frame = +3

Query: 129 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK 257
           +L ++ D+++      GR +TG+L+GFD  MNLVLD+  E+ +
Sbjct: 27  DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLR 69


>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +3

Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
           L  FM++++ +  N GR V G L+GFD   NL+L +S E
Sbjct: 3   LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = +3

Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
           L  ++D+K+ + L  G+ + G+LR FD F NL+L  ++E
Sbjct: 16  LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIE 54


>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score = 32.3 bits (70), Expect = 0.052
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +3

Query: 192 GVLRGFDPFMNLVLDESVE 248
           G +RGFD FMN+VLD++V+
Sbjct: 40  GQIRGFDEFMNIVLDDAVQ 58


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 31.9 bits (69), Expect = 0.069
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
           L K + KK+ I+L++G    G+L   D +MNL L+ + E
Sbjct: 9   LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEE 47


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 129 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
           ++   ++  L++    GR   G L  FD FMNLVL +  E
Sbjct: 5   KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQE 44


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 117 AHPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKTV 263
           A P +L +  +D+ + +KL   R + G L  +D  +N+VL ++ EE  T+
Sbjct: 8   AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDA-EEIVTI 56


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKTVSVT 272
           + K +   L + + + R   G L GFD ++N+VL +  E      VT
Sbjct: 11  IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVT 57


>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 96

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +3

Query: 135 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD 236
           K  +D +++++L    ++ G+L+  D F+N+ L+
Sbjct: 8   KTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLE 41


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 229  TKFMNGSKPRNTPVTARPAFSFIDNFLSMNF 137
            T+   GSKP NT V A    S ++  ++MNF
Sbjct: 919  TQLNTGSKPVNTNVEALTTISSMNQAVNMNF 949


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 330 DFSRLRVGK-KYHQCCKCASRFINK*I*NS 416
           D  + R GK K +QC  C+  FIN+ I NS
Sbjct: 351 DLWKKRHGKRKVYQCSNCSQTFINEDIQNS 380


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 322 RFQHYNTVATNYHHPNIVTL 263
           R Q   T+    HHPNI+TL
Sbjct: 67  RLQREVTILRQLHHPNIITL 86


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 385 EAHLQHW*YFLPTLSLLK--SV*RFQHYNTV 299
           ++H  HW Y LPT + LK  SV R  +Y+ V
Sbjct: 247 DSHNSHWWYNLPTEARLKGLSVGRTTNYSVV 277


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -3

Query: 307  NTVATNYHHPNIVTLTVLHSSTDSSRTKFMNGSKPRNTPVTARPAFSFIDNFLSMNFFNS 128
            ++ A N   P I + TVL+SST  + +  +N S    TP+T+  A +      S +  NS
Sbjct: 3038 SSTALNTSTP-ITSSTVLNSSTPITSSSVLNSS----TPITSSTALNTSTPITSSSVLNS 3092


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = -3

Query: 310 YNTVATNYHHPNIVTLTVLHSSTDSS-RTKFMNGSKPRNTPVTARPAFS 167
           Y TV T Y     +T TV HS  ++   T ++    P     T    +S
Sbjct: 631 YTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVETPYPTTVTTTTTVGYS 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,810
Number of Sequences: 5004
Number of extensions: 38198
Number of successful extensions: 154
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)