Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10499
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10773| Best HMM Match : TatC (HMM E-Value=0.31)                     30   1.5  
SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)              29   2.0  
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)                 28   6.2  
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)                 27   8.2  
SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)                       27   8.2  

>SB_10773| Best HMM Match : TatC (HMM E-Value=0.31)
          Length = 380

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 307 YNAGIFR-QTLVDLEWARNITNAVNVL 384
           YN G+F+ +TL D EW   IT+  NVL
Sbjct: 147 YNLGVFKTKTLEDEEWGLTITSLKNVL 173


>SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)
          Length = 327

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 198 THR*QRDPHSALLTIFCP*IFSILVDVLLTL 106
           +H+ Q DPH+A L++ C  ++S   D L+ +
Sbjct: 139 SHKAQEDPHNAFLSLLCHVVYSAEPDWLMNI 169


>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -3

Query: 301 VATNYHHPNIVTLTVLHSSTDSSRTKFMNGSKPRNTPVTA----RPAFSFIDN 155
           V T + H N+V     H    +  T++ NGS  R+          PAF+ +DN
Sbjct: 112 VLTAWAHANLVQYVKCHLDIHTRYTRYRNGSIDRSDETNVFSPYDPAFTCVDN 164


>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
          Length = 427

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRG 206
           +S A P ++K  +DK + IKLN G   T  L G
Sbjct: 249 VSHAEPADIKAALDKLVVIKLNGGLGTTMGLVG 281


>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
          Length = 575

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
 Frame = -3

Query: 355 LPTLSLLKSV*RFQHYNTVATNYHHPNIVTLTVLH--------SSTDSSRTKFMNGSKPR 200
           L T  LL +  + QH   +  N  HP  V+  VLH        S+     T  +N +   
Sbjct: 78  LDTNGLLMAACKVQHLGDIRANILHPRNVSSLVLHVVAGFTVPSNGLQMFTNLINLTLEN 137

Query: 199 NTPVTARP-AFSFIDNFLSMN 140
           N+     P AF  +DN  S+N
Sbjct: 138 NSISAIAPHAFKGLDNLQSLN 158


>SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)
          Length = 198

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 204 GFDPFMNLVLDESVE 248
           GFD +MNLVLDE+ E
Sbjct: 124 GFDEYMNLVLDEAEE 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,476,368
Number of Sequences: 59808
Number of extensions: 255857
Number of successful extensions: 763
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)