Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10499
(573 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 89 8e-18
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 89 8e-18
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 89 8e-18
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 89 8e-18
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 89 8e-18
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 89 8e-18
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 89 8e-18
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 89 8e-18
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 89 8e-18
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 63 6e-10
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 52 2e-06
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 52 2e-06
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 52 2e-06
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 39 0.014
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 39 0.014
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 39 0.014
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 39 0.014
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 39 0.014
AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein. 37 0.058
BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small ... 36 0.10
AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein. 36 0.10
AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein. 36 0.10
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 33 0.71
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 33 0.71
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 33 0.71
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 33 0.71
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 33 0.94
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 33 0.94
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 33 0.94
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 31 2.9
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 31 2.9
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 31 2.9
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 31 2.9
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 31 2.9
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 31 2.9
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 31 2.9
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 89.4 bits (212), Expect = 8e-18
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +3
Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/25 (80%), Positives = 25/25 (100%)
Frame = +2
Query: 260 GQRNNVGMVVIRGNSIIMLESLDRL 334
GQ+NN+GMVVIRGNSIIMLE+L+R+
Sbjct: 52 GQQNNIGMVVIRGNSIIMLEALERV 76
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 89.4 bits (212), Expect = 8e-18
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +3
Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/25 (80%), Positives = 25/25 (100%)
Frame = +2
Query: 260 GQRNNVGMVVIRGNSIIMLESLDRL 334
GQ+NN+GMVVIRGNSIIMLE+L+R+
Sbjct: 52 GQQNNIGMVVIRGNSIIMLEALERV 76
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 89.4 bits (212), Expect = 8e-18
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +3
Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/25 (80%), Positives = 25/25 (100%)
Frame = +2
Query: 260 GQRNNVGMVVIRGNSIIMLESLDRL 334
GQ+NN+GMVVIRGNSIIMLE+L+R+
Sbjct: 52 GQQNNIGMVVIRGNSIIMLEALERV 76
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 89.4 bits (212), Expect = 8e-18
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +3
Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/25 (80%), Positives = 25/25 (100%)
Frame = +2
Query: 260 GQRNNVGMVVIRGNSIIMLESLDRL 334
GQ+NN+GMVVIRGNSIIMLE+L+R+
Sbjct: 52 GQQNNIGMVVIRGNSIIMLEALERV 76
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 89.4 bits (212), Expect = 8e-18
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +3
Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/25 (80%), Positives = 25/25 (100%)
Frame = +2
Query: 260 GQRNNVGMVVIRGNSIIMLESLDRL 334
GQ+NN+GMVVIRGNSIIMLE+L+R+
Sbjct: 52 GQQNNIGMVVIRGNSIIMLEALERV 76
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 89.4 bits (212), Expect = 8e-18
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +3
Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/25 (80%), Positives = 25/25 (100%)
Frame = +2
Query: 260 GQRNNVGMVVIRGNSIIMLESLDRL 334
GQ+NN+GMVVIRGNSIIMLE+L+R+
Sbjct: 52 GQQNNIGMVVIRGNSIIMLEALERV 76
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 89.4 bits (212), Expect = 8e-18
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +3
Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/25 (80%), Positives = 25/25 (100%)
Frame = +2
Query: 260 GQRNNVGMVVIRGNSIIMLESLDRL 334
GQ+NN+GMVVIRGNSIIMLE+L+R+
Sbjct: 52 GQQNNIGMVVIRGNSIIMLEALERV 76
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 89.4 bits (212), Expect = 8e-18
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +3
Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/25 (80%), Positives = 25/25 (100%)
Frame = +2
Query: 260 GQRNNVGMVVIRGNSIIMLESLDRL 334
GQ+NN+GMVVIRGNSIIMLE+L+R+
Sbjct: 52 GQQNNIGMVVIRGNSIIMLEALERV 76
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 89.4 bits (212), Expect = 8e-18
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +3
Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MSKAHPPELKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/25 (80%), Positives = 25/25 (100%)
Frame = +2
Query: 260 GQRNNVGMVVIRGNSIIMLESLDRL 334
GQ+NN+GMVVIRGNSIIMLE+L+R+
Sbjct: 52 GQQNNIGMVVIRGNSIIMLEALERV 76
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 63.3 bits (147), Expect = 6e-10
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +3
Query: 144 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 35
Score = 46.8 bits (106), Expect = 5e-05
Identities = 20/25 (80%), Positives = 25/25 (100%)
Frame = +2
Query: 260 GQRNNVGMVVIRGNSIIMLESLDRL 334
GQ+NN+GMVVIRGNSIIMLE+L+R+
Sbjct: 40 GQQNNIGMVVIRGNSIIMLEALERV 64
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 51.6 bits (118), Expect = 2e-06
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +3
Query: 129 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIE 53
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 51.6 bits (118), Expect = 2e-06
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +3
Query: 129 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIE 53
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 51.6 bits (118), Expect = 2e-06
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +3
Query: 129 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
+L K++DK + +K GR +G+L+GFDP +NLVLD ++E
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIE 53
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 38.7 bits (86), Expect = 0.014
Identities = 15/39 (38%), Positives = 28/39 (71%)
Frame = +3
Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
L+ ++++ +++ + GR + G L+GFD +NL+LDES E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 38.7 bits (86), Expect = 0.014
Identities = 15/39 (38%), Positives = 28/39 (71%)
Frame = +3
Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
L+ ++++ +++ + GR + G L+GFD +NL+LDES E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 38.7 bits (86), Expect = 0.014
Identities = 15/39 (38%), Positives = 28/39 (71%)
Frame = +3
Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
L+ ++++ +++ + GR + G L+GFD +NL+LDES E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 38.7 bits (86), Expect = 0.014
Identities = 15/39 (38%), Positives = 28/39 (71%)
Frame = +3
Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
L+ ++++ +++ + GR + G L+GFD +NL+LDES E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 38.7 bits (86), Expect = 0.014
Identities = 15/39 (38%), Positives = 28/39 (71%)
Frame = +3
Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
L+ ++++ +++ + GR + G L+GFD +NL+LDES E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein.
Length = 145
Score = 36.7 bits (81), Expect = 0.058
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +3
Query: 177 GRAVTGVLRGFDPFMNLVLDESVE 248
GR +G+L+GFDP +NLVLD ++E
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIE 95
>BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 133
Score = 35.9 bits (79), Expect = 0.10
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 144 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
+DKK + L GR + G LR D F NLVL ++VE
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVE 48
>AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein.
Length = 133
Score = 35.9 bits (79), Expect = 0.10
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 144 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
+DKK + L GR + G LR D F NLVL ++VE
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVE 48
>AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein.
Length = 133
Score = 35.9 bits (79), Expect = 0.10
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 144 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
+DKK + L GR + G LR D F NLVL ++VE
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVE 48
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 33.1 bits (72), Expect = 0.71
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 102 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L+++ E
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEE 50
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 33.1 bits (72), Expect = 0.71
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 102 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L+++ E
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEE 50
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 33.1 bits (72), Expect = 0.71
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 102 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L+++ E
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEE 50
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 33.1 bits (72), Expect = 0.71
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 102 ITMSKAHPPE-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
+++ K P + LK+ + + + +KLN+G GVL D +MN+ L+++ E
Sbjct: 1 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEE 50
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 32.7 bits (71), Expect = 0.94
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 111 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 32.7 bits (71), Expect = 0.94
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 111 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 32.7 bits (71), Expect = 0.94
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 111 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
S+ P EL K + ++ I + + + + G L GFD F+N+VL++ E
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 31.1 bits (67), Expect = 2.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 186 VTGVLRGFDPFMNLVLDESVE-ECKTVSVTMLG 281
+ G + GFD +MNLVLD++ E KT S LG
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 31.1 bits (67), Expect = 2.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 186 VTGVLRGFDPFMNLVLDESVE-ECKTVSVTMLG 281
+ G + GFD +MNLVLD++ E KT S LG
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 31.1 bits (67), Expect = 2.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 186 VTGVLRGFDPFMNLVLDESVE-ECKTVSVTMLG 281
+ G + GFD +MNLVLD++ E KT S LG
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 31.1 bits (67), Expect = 2.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 186 VTGVLRGFDPFMNLVLDESVE-ECKTVSVTMLG 281
+ G + GFD +MNLVLD++ E KT S LG
Sbjct: 32 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 64
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 31.1 bits (67), Expect = 2.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 186 VTGVLRGFDPFMNLVLDESVE-ECKTVSVTMLG 281
+ G + GFD +MNLVLD++ E KT S LG
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 31.1 bits (67), Expect = 2.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 186 VTGVLRGFDPFMNLVLDESVE-ECKTVSVTMLG 281
+ G + GFD +MNLVLD++ E KT S LG
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 31.1 bits (67), Expect = 2.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 186 VTGVLRGFDPFMNLVLDESVE-ECKTVSVTMLG 281
+ G + GFD +MNLVLD++ E KT S LG
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,784,984
Number of Sequences: 237096
Number of extensions: 1231209
Number of successful extensions: 5609
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 3490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5609
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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