Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10499
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...    82   2e-16
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...    82   2e-16
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    48   4e-06
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    38   0.004
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    37   0.012
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    36   0.020
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    36   0.020
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    31   0.44 
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    28   4.1  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    28   4.1  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    28   4.1  
Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical p...    27   7.2  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    27   7.2  
AL033514-27|CAA22088.1|  363|Caenorhabditis elegans Hypothetical...    27   9.5  
AF039049-9|AAB94248.1|  494|Caenorhabditis elegans Cytochrome p4...    27   9.5  

>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 36/58 (62%), Positives = 45/58 (77%)
 Frame = +3

Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKTVSVTMLG 281
           MSK HPPELKK+MDK++ +KLN  R V+G+LRGFDPFMN+V+DE+VE  K      LG
Sbjct: 1   MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLG 58



 Score = 33.5 bits (73), Expect = 0.11
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +2

Query: 257 DGQRNNVGMVVIRGNSIIMLESLDRL 334
           DG   N+GM VIRGNS++++E  +R+
Sbjct: 51  DGGSVNLGMTVIRGNSVVIMEPKERI 76


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 36/58 (62%), Positives = 45/58 (77%)
 Frame = +3

Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKTVSVTMLG 281
           MSK HPPELKK+MDK++ +KLN  R V+G+LRGFDPFMN+V+DE+VE  K      LG
Sbjct: 1   MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLG 58



 Score = 33.5 bits (73), Expect = 0.11
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +2

Query: 257 DGQRNNVGMVVIRGNSIIMLESLDRL 334
           DG   N+GM VIRGNS++++E  +R+
Sbjct: 51  DGGSVNLGMTVIRGNSVVIMEPKERI 76


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 19/40 (47%), Positives = 29/40 (72%)
 Frame = +3

Query: 129 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
           +L +F+DK++ +K   GR  +GVLRGFD  +N+VLD+  E
Sbjct: 15  DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCRE 54


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +3

Query: 144 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
           +DKKL + L  GR + G LR  D F NL+L++ VE
Sbjct: 18  LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVE 52


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
 Frame = +3

Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE----SVEECKTVSVTMLG 281
           L  +M++ +++    GR + G+L+GFD  +NLV+++    S  E + V  T LG
Sbjct: 5   LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLG 58


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
 Frame = +3

Query: 93  KKHITMSKA--HPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKT 260
           KK +T+S     P +L +  +D+++ +K+   R + G LR FD  +N+VL E VEE  T
Sbjct: 5   KKEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSE-VEETIT 62


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 108 MSKAHPPE--LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
           MSK   P   LKK + K + +KLN+G    G+L   D +MN+ L+++ E
Sbjct: 1   MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEE 49


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
           + K +  K+ + +   + + G L GFD ++N+VL++ VE
Sbjct: 18  IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVE 56


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 205  PRNTPVTARPAFSFIDNFLSMNFFNSGGCAFDIVMCFLKYYNTELML 65
            P   PVT RPA     N  SM  ++S  C F + +C +     EL+L
Sbjct: 1709 PAGIPVTGRPALKLEMNCTSMKHYDSFDC-FRLKVCDMSVQLDELLL 1754


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical protein
            ZK1193.2 protein.
          Length = 1250

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 45   YTKIHDNNINSVL*YFKKHITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGF-DP 215
            YT I+ NNI SV+ Y       +   P  ++KF+    S   + G    G   GF DP
Sbjct: 1131 YTGINGNNIQSVMDYIVLQNNSAPFRPAPVRKFLMLLSSQGWDKGNVSEGKENGFSDP 1188


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 339 RLRVGKKYHQCCKCASRFINK*I*NSDLK 425
           R  +G K  QC KCA   +NK + NS +K
Sbjct: 565 RNHIGSKPFQCKKCAYNCVNKSMLNSHMK 593


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 339 RLRVGKKYHQCCKCASRFINK*I*NSDLK 425
           R  +G K  QC KCA   +NK + NS +K
Sbjct: 587 RNHIGSKPFQCKKCAYNCVNKSMLNSHMK 615


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 339 RLRVGKKYHQCCKCASRFINK*I*NSDLK 425
           R  +G K  QC KCA   +NK + NS +K
Sbjct: 587 RNHIGSKPFQCKKCAYNCVNKSMLNSHMK 615


>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 102 ITMSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
           +T+SK +  ++   ++ ++ I L  GR   G  + FD  MN++L E  E
Sbjct: 1   MTISKNN--KMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEE 47


>Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical
           protein Y49E10.15 protein.
          Length = 90

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 192 GVLRGFDPFMNLVLDESVE 248
           G + GFD FMN+V DE+ E
Sbjct: 41  GYIIGFDEFMNVVFDEAEE 59


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDP 215
           + K + P+  K  DKK +IKL  GR    ++   DP
Sbjct: 248 LGKGYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDP 283


>Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical
           protein F17A2.13 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 304 YYNAGIFRQTLVDLEWARNITNAVNVLHVSSINKYK 411
           Y NAGI+RQ + D+ +  N     +  H  ++N  +
Sbjct: 9   YSNAGIYRQAMEDIMFTPNKDKKKSAFHDETLNSLR 44


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 316 QHYNTVATNYHHPNIVTLTVLHSSTDSSRTKFMNGSKPRNTPVTARPAFSFIDN 155
           QHYN+ ++++H P  +  T    S DS    + N +   +TP       S +D+
Sbjct: 273 QHYNSNSSDHHPPRRLAKTQSDLSFDSLNNTYFNNTS-NHTPSNTFLNHSTVDS 325


>AL033514-27|CAA22088.1|  363|Caenorhabditis elegans Hypothetical
           protein Y75B8A.28 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -3

Query: 322 RFQHYNTVATNYHHPNIVTLTVLHSSTDSSRTKFMNGSKPRNTPVTARPAFSFIDN 155
           RF++  +  T+    N+ T  +LH + D     F+  +   N+ +      SF+ N
Sbjct: 212 RFENLTSEKTDIVSKNLETEKLLHFACDRVLIPFLGDNNSNNSNIGTEDVISFLHN 267


>AF039049-9|AAB94248.1|  494|Caenorhabditis elegans Cytochrome p450
           family protein 35A5 protein.
          Length = 494

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 117 AHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKTVSVT 272
           AHP  + K  ++ L I  N  R+++   R   P++N ++ E       ++VT
Sbjct: 323 AHPEVMDKAREELLKITENRARSLSLSDRPTTPYLNAMIGEIQRHASILNVT 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,164,052
Number of Sequences: 27780
Number of extensions: 211218
Number of successful extensions: 471
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)