Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10499
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.53 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   1.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -3

Query: 352 PTLSLLKSV*RFQHYNTVATNYHHPNIVTLTVLHSSTDSSRTKFMNGSKPRN 197
           P+ SLL S     H    + N HH N  T  +     +S  +K +N  K  N
Sbjct: 44  PSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVNDKKEEN 95


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 339 RLRVGKKYHQCCKCASRFINK*I*NSDLK 425
           R   G K  +C KC+   +NK + NS LK
Sbjct: 9   RNHFGSKPFKCEKCSYSCVNKSMLNSHLK 37


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 235 MNQSRSVRRSA*QCWDGGNSWQ 300
           MN+S+S+      C D G+ W+
Sbjct: 305 MNKSKSITEPPKNCADSGSIWE 326


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 229 FLMNQSRSVRRSA*QCWDG 285
           F +NQS  ++RS    W+G
Sbjct: 691 FQVNQSHGIKRSGSHSWEG 709


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 180 RAVTGVLRGFDPFMNLVLDESVEE 251
           R V   + GFDP++    DE +E+
Sbjct: 225 RMVDENINGFDPYVKTPNDEELEK 248


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 355 RNITNAVNVLH 387
           +N+TN +NV+H
Sbjct: 30  KNLTNTLNVIH 40


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 295 TNYHHPNIVTLTVLHSSTDSS 233
           ++ HHPN      +H +T SS
Sbjct: 398 SDLHHPNCKINRKVHHTTSSS 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,660
Number of Sequences: 438
Number of extensions: 2599
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)