Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10499
(573 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 72 2e-13
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 70 1e-12
At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putati... 54 5e-08
At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putati... 54 5e-08
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 42 2e-04
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 41 5e-04
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 38 0.004
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 38 0.004
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 33 0.10
At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putati... 32 0.31
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 31 0.41
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 31 0.41
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 31 0.55
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 31 0.55
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 31 0.72
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 30 1.3
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 30 1.3
At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta... 29 2.9
At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL... 28 3.8
At3g08730.1 68416.m01015 serine/threonine protein kinase (PK1) (... 28 5.1
At3g08720.2 68416.m01014 serine/threonine protein kinase (PK19) ... 28 5.1
At3g08720.1 68416.m01013 serine/threonine protein kinase (PK19) ... 28 5.1
At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate dehy... 28 5.1
At3g05320.1 68416.m00580 expressed protein 27 8.9
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 72.1 bits (169), Expect = 2e-13
Identities = 34/48 (70%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Frame = +3
Query: 108 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MS++ PP+LKK+MDKKL IKLNA R VTG LRGFD FMNLV+D +VE
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE 48
Score = 31.9 bits (69), Expect = 0.31
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +2
Query: 266 RNNVGMVVIRGNSIIMLESLD 328
+ ++GMVVIRGNSI+ +E+L+
Sbjct: 54 KTDIGMVVIRGNSIVTVEALE 74
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 70.1 bits (164), Expect = 1e-12
Identities = 33/48 (68%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Frame = +3
Query: 108 MSKA-HPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MS++ PP+LKK+MDKKL IKLNA R V G LRGFD FMNLV+D +VE
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE 48
Score = 31.9 bits (69), Expect = 0.31
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +2
Query: 266 RNNVGMVVIRGNSIIMLESLD 328
+ ++GMVVIRGNSI+ +E+L+
Sbjct: 54 KTDIGMVVIRGNSIVTVEALE 74
>At2g03870.2 68415.m00349 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 54.4 bits (125), Expect = 5e-08
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +3
Query: 129 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
+L KF+DK + +KL GR VTG L+G+D +NLVLDE+VE
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 49
>At2g03870.1 68415.m00348 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm7 [Homo sapiens]
SWISS-PROT:Q9UK45
Length = 99
Score = 54.4 bits (125), Expect = 5e-08
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +3
Query: 129 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
+L KF+DK + +KL GR VTG L+G+D +NLVLDE+VE
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE 49
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +3
Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
L ++DKKL + L GR + G+LR FD F N VL+E+ E
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYE 53
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +3
Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
L+ +D+ +S+ N GR + GVL+GFD N++LDES E
Sbjct: 7 LETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHE 45
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
L ++D+KL + L GR + G LR FD F N VL+ + E
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
L ++D+KL + L GR + G LR FD F N VL+ + E
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 33.5 bits (73), Expect = 0.10
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 144 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKTVSV 269
+D+++ +KL + R + G L FD +N++L + E TV +
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEI 61
>At5g48870.1 68418.m06045 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm5 [Homo sapiens]
SWISS-PROT:Q9Y4Y9
Length = 88
Score = 31.9 bits (69), Expect = 0.31
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 111 SKAHPPEL-KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
S+ P EL + + K+ + + + + G+L+GFD ++N+VL++ E
Sbjct: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTE 52
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 31.5 bits (68), Expect = 0.41
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MS + ++ +F++ ++ + + GR + G FD MNLVL + E
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 31.5 bits (68), Expect = 0.41
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MS + ++ +F++ ++ + + GR + G FD MNLVL + E
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 108 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
MS + ++ +F++ ++ + + GR + G FD MNLVL + E
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE 47
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
LK K + +KLN+G G+L D +MN+ ++++ E
Sbjct: 19 LKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEE 57
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 30.7 bits (66), Expect = 0.72
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +3
Query: 144 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKTVSV 269
+++++ +KL + R + G L FD +N++L + E T+ +
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 61
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 186 VTGVLRGFDPFMNLVLDESVE 248
+ G + GFD +MNLVLDE+ E
Sbjct: 39 IEGRITGFDEYMNLVLDEAEE 59
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 186 VTGVLRGFDPFMNLVLDESVE 248
+ G + GFD +MNLVLDE+ E
Sbjct: 39 IEGRITGFDEYMNLVLDEAEE 59
>At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 132 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 248
LK + + +KLN+G G L D +MN+ ++++ E
Sbjct: 19 LKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEE 57
>At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL3)
identical to IAA-amino acid hydrolase homolog ILL3
[Arabidopsis thaliana] gi|3420801|gb|AAC31939
Length = 428
Score = 28.3 bits (60), Expect = 3.8
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -3
Query: 190 VTARPAFSFIDNFLSMNFFNSGGCAFDIVMCFLKYYNT 77
+ +R + + LS+ F SGG FD++ ++++ T
Sbjct: 245 IISREVDPLLSHVLSVTFMKSGGSEFDVIPAYVEFGGT 282
>At3g08730.1 68416.m01015 serine/threonine protein kinase (PK1)
(PK6) identical to serine/threonine-protein kinase
AtPK1/AtPK6 (ribosomal-protein S6 kinase ATPK6)
[Arabidopsis thaliana] SWISS-PROT:P42818
Length = 465
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 280 DGGNSWQQYYNAGIFRQTLVDLEWARNITNAVNVLHVSSI 399
+GG+ + Q Y+ G+FR+ L + + I +AV+ LH I
Sbjct: 215 NGGHLFFQLYHQGLFREDLARV-YTAEIVSAVSHLHEKGI 253
>At3g08720.2 68416.m01014 serine/threonine protein kinase (PK19)
identical to serine/threonine-protein kinase AtPK19
(Ribosomal-protein S6 kinase homolog) [Arabidopsis
thaliana] SWISS-PROT:Q39030
Length = 471
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 280 DGGNSWQQYYNAGIFRQTLVDLEWARNITNAVNVLHVSSI 399
+GG+ + Q Y+ G+FR+ L + + I +AV+ LH I
Sbjct: 221 NGGHLFFQLYHQGLFREDLARV-YTAEIVSAVSHLHEKGI 259
>At3g08720.1 68416.m01013 serine/threonine protein kinase (PK19)
identical to serine/threonine-protein kinase AtPK19
(Ribosomal-protein S6 kinase homolog) [Arabidopsis
thaliana] SWISS-PROT:Q39030
Length = 471
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 280 DGGNSWQQYYNAGIFRQTLVDLEWARNITNAVNVLHVSSI 399
+GG+ + Q Y+ G+FR+ L + + I +AV+ LH I
Sbjct: 221 NGGHLFFQLYHQGLFREDLARV-YTAEIVSAVSHLHEKGI 259
>At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein low similarity to SP|Q26756
Glycerol-3-phosphate dehydrogenase [NAD+], glycosomal
(EC 1.1.1.8) {Trypanosoma brucei rhodesiense}; contains
Pfam profile PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 420
Score = 27.9 bits (59), Expect = 5.1
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = -3
Query: 268 TLTVLHSSTDSSRTKFMNGSKPRNTPVTARPAFSFIDNFLSMNFFNSGGCAFDIVMCFLK 89
T+T L + D T F+N S+ R V + D SMN G V+ +
Sbjct: 323 TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGETLDDILTSMNQVAEGVATAGAVIALAQ 382
Query: 88 YYNTELMLLS 59
YN +L +L+
Sbjct: 383 KYNVKLPVLT 392
>At3g05320.1 68416.m00580 expressed protein
Length = 351
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 274 CWDGGNSWQQY-YN-AGIFRQTLVDLEWARNITNA 372
C DGGN W+ Y YN AG V W N+T++
Sbjct: 302 CKDGGNKWRSYAYNLAG--ESNGVPRRWMTNMTHS 334
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,243,509
Number of Sequences: 28952
Number of extensions: 186130
Number of successful extensions: 472
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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