Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10497
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   144   2e-35
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   143   2e-35
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    26   7.1  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   9.4  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  144 bits (348), Expect = 2e-35
 Identities = 70/102 (68%), Positives = 85/102 (83%), Gaps = 3/102 (2%)
 Frame = +3

Query: 255 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 434
           GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 435 KIRKLFNLSKEDDVRRYVVKR-VLPARKEKK--TLNPDIRHL 551
           KIR+ FNLSKEDDVR++V++R V+P ++ KK  T  P I+ L
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQRL 181



 Score =  110 bits (265), Expect = 2e-25
 Identities = 54/98 (55%), Positives = 67/98 (68%)
 Frame = +1

Query: 19  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 199 FPMKQGVLTNSRVRLLMSKATHVTDRAAMERENVNQFV 312
           FPM QGVL   RVRLL+ +A H   R   + E   + V
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97



 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 29/72 (40%), Positives = 38/72 (52%)
 Frame = +2

Query: 488 RQTRAPSKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 667
           R+   P KEGK   KP  KAPKIQRLVTP  LQ                    AE+A+L+
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215

Query: 668 AQRKKESKVRRQ 703
           A+R  E+K +++
Sbjct: 216 AKRVAEAKQKKE 227


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  143 bits (347), Expect = 2e-35
 Identities = 69/102 (67%), Positives = 85/102 (83%), Gaps = 3/102 (2%)
 Frame = +3

Query: 255 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 434
           GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 435 KIRKLFNLSKEDDVRRYVVKR-VLPARKEKK--TLNPDIRHL 551
           KIR+ FNLSKEDDVR++V++R V+P ++ KK  T  P I+ L
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQRL 181



 Score =  110 bits (265), Expect = 2e-25
 Identities = 54/98 (55%), Positives = 67/98 (68%)
 Frame = +1

Query: 19  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 199 FPMKQGVLTNSRVRLLMSKATHVTDRAAMERENVNQFV 312
           FPM QGVL   RVRLL+ +A H   R   + E   + V
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 30/72 (41%), Positives = 38/72 (52%)
 Frame = +2

Query: 488 RQTRAPSKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 667
           R+   P KEGK   KP  KAPKIQRLVTP  LQ                    AE+A+L+
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215

Query: 668 AQRKKESKVRRQ 703
           A+R  E+K +R+
Sbjct: 216 AKRVAEAKQKRE 227


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = +1

Query: 31  VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRV--AGGNDKQGFP 204
           + Y A    K+   VD H    F EK +   +EA +L  +      RV     ++ + F 
Sbjct: 317 IPYSALPFSKI--AVDFHIDENFIEKNLLEIIEAKKLNGKVDSLQKRVYIEPSSEPENF- 373

Query: 205 MKQGVLTNSRVRLLMSKATHVTDRAAMERENVNQFVDVL 321
             + +   ++  LL SKA ++   AAM  EN +    V+
Sbjct: 374 --EDIKNIAQTSLLYSKALYLQTLAAMNTENTDDEAPVI 410


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 473 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 339
           +I + K E +   GSTFG   +G       R++   L H+N  QD
Sbjct: 98  VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,172
Number of Sequences: 5004
Number of extensions: 59709
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)