Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10497
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   5.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.9  

>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 654 MLNCLHRERRNPRCVARKRSNAGAQLQCVI 743
           +L  +   +RNP  V RK+S+   +L+ ++
Sbjct: 112 LLGIVDDYQRNPSVVGRKKSSGWRKLRNIV 141


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 109 RMGAEVEADQLGDEWKGYV 165
           R+G  +++D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 396  GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPARKEKKT 527
            GN+  ++ P +  +  +LF+ S    V  + +  + P   EK T
Sbjct: 1016 GNMQWKIWPMKGEEKSRLFHYSVVPFVSNHDILNLRPLSMEKGT 1059


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,699
Number of Sequences: 438
Number of extensions: 3947
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)