Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10496
(738 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 164 2e-39
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 157 2e-37
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 156 6e-37
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 145 9e-34
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 136 4e-31
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 126 7e-28
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 123 4e-27
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 121 2e-26
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 119 6e-26
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 116 5e-25
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 108 2e-22
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 89 8e-17
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 87 3e-16
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 80 6e-14
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 78 3e-13
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 75 2e-12
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 72 2e-11
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 71 2e-11
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 67 5e-10
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 64 5e-09
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 60 7e-08
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 58 2e-07
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 56 7e-07
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 56 1e-06
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 55 2e-06
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 54 5e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 53 6e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 53 8e-06
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 52 1e-05
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 51 3e-05
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 47 4e-04
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 45 0.002
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 44 0.005
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 43 0.007
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 43 0.009
UniRef50_Q8BY81 Cluster: 3 days neonate thymus cDNA, RIKEN full-... 38 0.34
UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1... 36 1.0
UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: V... 36 1.0
UniRef50_Q2VZ09 Cluster: Predicted SAM-dependent methyltransfera... 35 1.8
UniRef50_A7ATI1 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_A7CME0 Cluster: Putative uncharacterized protein precur... 35 2.4
UniRef50_A5G642 Cluster: Beta-ketoacyl synthase; n=1; Geobacter ... 34 3.2
UniRef50_Q9KI91 Cluster: VrrB; n=17; Bacteria|Rep: VrrB - Bacill... 34 4.2
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 34 4.2
UniRef50_UPI00006A1FE8 Cluster: Coiled-coil domain-containing pr... 33 5.5
UniRef50_Q5QMN1 Cluster: Putative uncharacterized protein P0419B... 33 5.5
UniRef50_Q0DW21 Cluster: Os03g0101400 protein; n=1; Oryza sativa... 33 5.5
UniRef50_A7TPB7 Cluster: Putative uncharacterized protein; n=1; ... 33 5.5
UniRef50_A5WHY9 Cluster: TonB-dependent receptor; n=1; Psychroba... 33 7.3
UniRef50_Q2R2L4 Cluster: Leucine Rich Repeat family protein, exp... 33 9.7
UniRef50_Q8SZT1 Cluster: GH27708p; n=18; Eumetazoa|Rep: GH27708p... 33 9.7
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 9.7
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 164 bits (399), Expect = 2e-39
Identities = 75/91 (82%), Positives = 82/91 (90%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
GPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV K
Sbjct: 4 GPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTK 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMELSQLRR 273
IV QRL+KVDGKVRTDPTYPAG+M++ L +
Sbjct: 64 IVMQRLVKVDGKVRTDPTYPAGYMDVITLEK 94
Score = 144 bits (349), Expect = 2e-33
Identities = 64/76 (84%), Positives = 71/76 (93%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K
Sbjct: 174 KFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNK 233
Query: 689 AYISLPRGKGIRLTIA 736
YISLP+GKG++L+IA
Sbjct: 234 PYISLPKGKGVKLSIA 249
Score = 140 bits (339), Expect = 3e-32
Identities = 62/90 (68%), Positives = 73/90 (81%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
V+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIR
Sbjct: 89 VITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIR 148
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFISLSLG 524
YPDPLI NDS+Q+DIA+ KI D+I G
Sbjct: 149 YPDPLIHANDSVQVDIASGKITDYIKFDSG 178
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 157 bits (382), Expect = 2e-37
Identities = 71/86 (82%), Positives = 78/86 (90%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
GPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV K
Sbjct: 4 GPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKK 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMEL 258
I QR IK+DGKVRTD TYPAGFM++
Sbjct: 64 ICMQRFIKIDGKVRTDITYPAGFMDV 89
Score = 144 bits (348), Expect = 3e-33
Identities = 63/90 (70%), Positives = 74/90 (82%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
V+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIR
Sbjct: 89 VISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIR 148
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFISLSLG 524
YPDPLIKVND+IQ+D+ T KI DFI G
Sbjct: 149 YPDPLIKVNDTIQIDLETGKITDFIKFDTG 178
Score = 134 bits (325), Expect = 2e-30
Identities = 56/76 (73%), Positives = 70/76 (92%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF++GNLCM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGKG K
Sbjct: 174 KFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNK 233
Query: 689 AYISLPRGKGIRLTIA 736
+ISLPRGKGIRLTIA
Sbjct: 234 PWISLPRGKGIRLTIA 249
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 156 bits (378), Expect = 6e-37
Identities = 70/86 (81%), Positives = 77/86 (89%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
GPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV K
Sbjct: 4 GPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKK 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMEL 258
I QR IK+DGKVRTD TYP GFM++
Sbjct: 64 ICMQRFIKIDGKVRTDITYPTGFMDV 89
Score = 134 bits (324), Expect = 2e-30
Identities = 55/76 (72%), Positives = 70/76 (92%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF++ N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGKG K
Sbjct: 206 KFDTSNMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNK 265
Query: 689 AYISLPRGKGIRLTIA 736
++SLPRGKGIRLTIA
Sbjct: 266 PWVSLPRGKGIRLTIA 281
Score = 87.4 bits (207), Expect(2) = 2e-27
Identities = 36/54 (66%), Positives = 46/54 (85%)
Frame = +3
Query: 348 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 509
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFI
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFI 205
Score = 58.4 bits (135), Expect(2) = 2e-27
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 350
V+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 89 VISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 145 bits (352), Expect = 9e-34
Identities = 65/86 (75%), Positives = 75/86 (87%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
G KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+
Sbjct: 4 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVIS 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMEL 258
I+ QR I+VDGKVRTD TYPAGFM++
Sbjct: 64 ILMQRHIQVDGKVRTDKTYPAGFMDV 89
Score = 128 bits (309), Expect = 1e-28
Identities = 58/93 (62%), Positives = 71/93 (76%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
VVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIR
Sbjct: 89 VVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIR 148
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFISLSLGTCV 533
YPDPLIK ND+I+LD+ KI++FI +G V
Sbjct: 149 YPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 118 bits (285), Expect = 1e-25
Identities = 51/75 (68%), Positives = 64/75 (85%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK
Sbjct: 174 KFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
Query: 689 AYISLPRGKGIRLTI 733
++SLP+GKGI+LTI
Sbjct: 234 PWVSLPKGKGIKLTI 248
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 136 bits (330), Expect = 4e-31
Identities = 59/96 (61%), Positives = 71/96 (73%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
GP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV
Sbjct: 4 GPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTM 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMELSQLRRLMNCF 288
IVK R IK+DGK+RTD YP GFM++ + R F
Sbjct: 64 IVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
Score = 105 bits (253), Expect = 9e-22
Identities = 45/90 (50%), Positives = 67/90 (74%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
V+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIR
Sbjct: 89 VLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIR 148
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFISLSLG 524
YP P ++ ND+I+L++ T KI+DF+ +G
Sbjct: 149 YPHPELQANDTIKLNLETGKIVDFVKFDIG 178
Score = 105 bits (253), Expect = 9e-22
Identities = 46/72 (63%), Positives = 57/72 (79%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF+ GN M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGKGT+
Sbjct: 174 KFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGTE 233
Query: 689 AYISLPRGKGIR 724
++LP KGI+
Sbjct: 234 TLVNLPLDKGIK 245
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 126 bits (303), Expect = 7e-28
Identities = 52/76 (68%), Positives = 66/76 (86%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IGKG
Sbjct: 146 KFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNI 205
Query: 689 AYISLPRGKGIRLTIA 736
+ISLP GKGIR TIA
Sbjct: 206 PWISLPHGKGIRFTIA 221
Score = 122 bits (294), Expect = 9e-27
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +1
Query: 4 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 183
P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 5 PRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Query: 184 VKQRLIKVDGK 216
Q IK+DGK
Sbjct: 65 RMQHFIKMDGK 75
Score = 114 bits (274), Expect = 2e-24
Identities = 49/75 (65%), Positives = 59/75 (78%)
Frame = +3
Query: 300 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 479
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 480 IATTKIMDFISLSLG 524
+ T KI DF G
Sbjct: 136 LETGKITDFFKFDTG 150
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 123 bits (297), Expect = 4e-27
Identities = 60/92 (65%), Positives = 71/92 (77%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV K
Sbjct: 15 GPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDEVKK 73
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMELSQLRRL 276
I Q IKVDGK+RTD P M++ + ++
Sbjct: 74 ICMQWFIKVDGKIRTDNNLPYWIMDVISIDKM 105
Score = 110 bits (265), Expect = 3e-23
Identities = 49/88 (55%), Positives = 64/88 (72%)
Frame = +3
Query: 234 LSCWIYGVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 413
L WI V+SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 414 HDGRTIRYPDPLIKVNDSIQLDIATTKI 497
HD T+R+PD LIKVND+IQ+D+ T KI
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI 179
Score = 82.2 bits (194), Expect = 1e-14
Identities = 35/66 (53%), Positives = 49/66 (74%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF++GNLC++TGG N GR+G I +RERHP SFD H+KD+ ++F+ +F+I KG K
Sbjct: 183 KFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGNK 238
Query: 689 AYISLP 706
+ISLP
Sbjct: 239 PWISLP 244
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 121 bits (292), Expect = 2e-26
Identities = 56/92 (60%), Positives = 68/92 (73%)
Frame = +1
Query: 13 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 192
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 193 RLIKVDGKVRTDPTYPAGFMELSQLRRLMNCF 288
RL+KVDGKVRT+ YP G M++ +L + F
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 99.1 bits (236), Expect = 1e-19
Identities = 41/90 (45%), Positives = 63/90 (70%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
V+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI
Sbjct: 103 VIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTIS 162
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFISLSLG 524
Y DP ++V+D+++ +I T ++ I +G
Sbjct: 163 YVDPSVRVHDALKFNIKTGEVESVIKFKVG 192
Score = 85.4 bits (202), Expect = 1e-15
Identities = 39/75 (52%), Positives = 54/75 (72%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF+ G++ M+T G N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG+
Sbjct: 188 KFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGENEH 247
Query: 689 AYISLPRGKGIRLTI 733
ISLP +G+R +I
Sbjct: 248 PLISLPAREGVRPSI 262
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 119 bits (287), Expect = 6e-26
Identities = 54/87 (62%), Positives = 65/87 (74%)
Frame = +1
Query: 7 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 186
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 187 KQRLIKVDGKVRTDPTYPAGFMELSQL 267
+Q L+ VD R D YPAGFM++ ++
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEI 89
Score = 84.6 bits (200), Expect = 2e-15
Identities = 42/93 (45%), Positives = 54/93 (58%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
VV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IR
Sbjct: 86 VVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIR 145
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFISLSLGTCV 533
YPDP + D+I ++ K +D I G V
Sbjct: 146 YPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAV 178
Score = 78.2 bits (184), Expect = 2e-13
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Frame = +2
Query: 428 HPLPRPTYQSQRFHPVRHRNYEDYGLHKFESGNLCMITGGRNLGRVGTIVSRERHPGSFD 607
+P P + + V+ + D L K G ++TGG N GR+G IV E HPG+F+
Sbjct: 146 YPDPHTSIGDTIVYNVKEKKCVD--LIKNRQGKAVIVTGGANRGRIGEIVKVECHPGAFN 203
Query: 608 IVHIKDSTGHTFATRLNNVFIIGKG-TKAYISLPRGKGIRLTI 733
I H+KD++G FATR N+F+IGK +++P+ +G+R+ +
Sbjct: 204 IAHLKDASGAEFATRAANIFVIGKDLNNLQVTVPKQQGLRMNV 246
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 116 bits (280), Expect = 5e-25
Identities = 53/97 (54%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Frame = +3
Query: 246 IYGVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 425
+ V+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGR
Sbjct: 86 VMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGR 145
Query: 426 TIRYPDPLIKVNDSIQLDIATTKIMDFISLSLGT-CV 533
TIR+P+ LIK NDSI LD+ K++DFI S+G+ CV
Sbjct: 146 TIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
Score = 113 bits (273), Expect = 3e-24
Identities = 50/90 (55%), Positives = 67/90 (74%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
G KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L
Sbjct: 4 GIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLN 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMELSQLR 270
I+K+ I VDGKVR D +PAG M++ ++
Sbjct: 64 ILKKNEIYVDGKVRADKNFPAGVMDVISIK 93
Score = 79.0 bits (186), Expect = 1e-13
Identities = 34/72 (47%), Positives = 51/72 (70%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF G+LC++ G N+GR+G ++ GS IV +KD G +F+T+ N+F+IGKGTK
Sbjct: 174 KFSIGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTK 233
Query: 689 AYISLPRGKGIR 724
++ISLPR +G+R
Sbjct: 234 SFISLPRFRGLR 245
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 108 bits (259), Expect = 2e-22
Identities = 47/90 (52%), Positives = 64/90 (71%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
VV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR
Sbjct: 201 VVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIR 260
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFISLSLG 524
+P+P IK+ D+++ D+ KI +F L G
Sbjct: 261 FPNPEIKIGDTLKYDLVNNKIENFAHLESG 290
Score = 98.3 bits (234), Expect = 2e-19
Identities = 42/73 (57%), Positives = 55/73 (75%)
Frame = +2
Query: 515 ESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAY 694
ESGN+C I G N+GRVG I E+H GSFDI H+KD+ G+ FATRL N+F++G+G K++
Sbjct: 288 ESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSW 347
Query: 695 ISLPRGKGIRLTI 733
I LP G G+R TI
Sbjct: 348 IELPSGDGVRETI 360
Score = 85.4 bits (202), Expect = 1e-15
Identities = 54/127 (42%), Positives = 70/127 (55%), Gaps = 31/127 (24%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPSTG 93
GPKKHLKR+NAPK+WML+ KL +Y A RPS G
Sbjct: 85 GPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQG 144
Query: 94 PHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMELSQL 267
PHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G M++ ++
Sbjct: 145 PHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRI 204
Query: 268 RRLMNCF 288
+ F
Sbjct: 205 EKTDQSF 211
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 89.4 bits (212), Expect = 8e-17
Identities = 39/91 (42%), Positives = 59/91 (64%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+
Sbjct: 4 GHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSI 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMELSQLRR 273
I+ ++ IKV+G+VRT+ +P G ++ + +
Sbjct: 64 ILAEKNIKVNGRVRTNSHFPVGLFDVVSIEK 94
Score = 77.0 bits (181), Expect = 5e-13
Identities = 36/88 (40%), Positives = 61/88 (69%)
Frame = +3
Query: 246 IYGVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 425
++ VVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G
Sbjct: 86 LFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGL 144
Query: 426 TIRYPDPLIKVNDSIQLDIATTKIMDFI 509
+IR+ DP I + +I++ T+K++++I
Sbjct: 145 SIRFCDPAIDLGYTIKISNETSKVIEYI 172
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 87.4 bits (207), Expect = 3e-16
Identities = 42/92 (45%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 177
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 178 KIVKQRLIKVDGKVRTDPTYPAGFMELSQLRR 273
KI+ + I VDG VR +P +P G M++ ++ R
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 36.7 bits (81), Expect = 0.59
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Frame = +3
Query: 228 PYLSCWIYGVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 407
P I VV I +T + +R++ + R + I+ EEA+ K+C++K +
Sbjct: 84 PKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQI 143
Query: 408 VTHDGRT--IRYPDP------LIKVNDSIQLDI 482
HDG+ + DP + V DS+ L++
Sbjct: 144 TMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLEL 176
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 79.8 bits (188), Expect = 6e-14
Identities = 37/86 (43%), Positives = 53/86 (61%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E K
Sbjct: 5 GPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKK 64
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMEL 258
I++ I +DG R + +PAG M++
Sbjct: 65 IIQTGKILIDGLKRKEYKHPAGLMDV 90
Score = 39.5 bits (88), Expect = 0.084
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +2
Query: 512 FESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 679
F G L ITGG+++G IV E DIV +++ G F T VFI+G+
Sbjct: 182 FGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 77.8 bits (183), Expect = 3e-13
Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 13 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 189
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 190 QRLIKVDGKVRTDPTYPAGFMELSQL 267
+ +KVDG VR D +P G M++ ++
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEI 88
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 74.9 bits (176), Expect = 2e-12
Identities = 33/85 (38%), Positives = 51/85 (60%)
Frame = +1
Query: 13 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 192
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 193 RLIKVDGKVRTDPTYPAGFMELSQL 267
+KVDGKVR D YP G M++ +L
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIEL 87
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 71.7 bits (168), Expect = 2e-11
Identities = 33/89 (37%), Positives = 53/89 (59%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K
Sbjct: 5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARK 64
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMELSQL 267
++ + +VDG VR D +P GFM++ ++
Sbjct: 65 LISEGHFRVDGVVRKDYKFPVGFMDVIEV 93
Score = 53.6 bits (123), Expect = 5e-06
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGKGT 685
KF G + +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG
Sbjct: 183 KFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-D 241
Query: 686 KAYISLPRG 712
+ ISLP G
Sbjct: 242 RPVISLPEG 250
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 71.3 bits (167), Expect = 2e-11
Identities = 34/86 (39%), Positives = 51/86 (59%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +
Sbjct: 7 GSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARR 66
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMEL 258
I+ R+I+VDG+V TD +P G M++
Sbjct: 67 ILASRVIEVDGRVVTDYKFPVGLMDV 92
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 431
V+ I + +R++ D + I PEEA YKL +++R T HDGR +
Sbjct: 92 VLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNV 150
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 66.9 bits (156), Expect = 5e-10
Identities = 30/89 (33%), Positives = 47/89 (52%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMELSQL 267
I+ + VDG+V D +P GFM++ ++
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVGFMDIIEI 93
Score = 52.4 bits (120), Expect = 1e-05
Identities = 29/93 (31%), Positives = 47/93 (50%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
++ I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+ +
Sbjct: 90 IIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVI 147
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFISLSLGTCV 533
+ V D I L + +I + L G CV
Sbjct: 148 IDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 63.7 bits (148), Expect = 5e-09
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +1
Query: 13 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 192
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 193 RLIKVDGKVRTDPTYPAGFME 255
+ VDGKVR D Y G +
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFD 85
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 59.7 bits (138), Expect = 7e-08
Identities = 31/85 (36%), Positives = 45/85 (52%)
Frame = +1
Query: 13 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 192
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 193 RLIKVDGKVRTDPTYPAGFMELSQL 267
+ VDGKVR D YP G M++ ++
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEI 87
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 58.4 bits (135), Expect = 2e-07
Identities = 26/82 (31%), Positives = 45/82 (54%)
Frame = +1
Query: 13 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 192
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 193 RLIKVDGKVRTDPTYPAGFMEL 258
R + VDG++ TD G M++
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDV 86
Score = 35.1 bits (77), Expect = 1.8
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 285 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 443
FR I DV G+ I+ + A KLC+V +T + HDGR I D
Sbjct: 94 FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSD 146
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 56.4 bits (130), Expect = 7e-07
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +1
Query: 13 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 192
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 193 RLIKVDGKVRTDPTYPAGFMEL 258
+ VDG R D +P G M++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDI 85
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 55.6 bits (128), Expect = 1e-06
Identities = 32/75 (42%), Positives = 41/75 (54%)
Frame = -3
Query: 733 DGEADALAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQ 554
DGE D LA +RD RL A D EHV + R + ++ GVL VHN EG + LA D
Sbjct: 33 DGELDTLALGKRDHRLVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATG 92
Query: 553 VTASRDHTQVPRLKL 509
V + DH Q ++L
Sbjct: 93 VVTTGDHAQSADVEL 107
Score = 37.1 bits (82), Expect = 0.45
Identities = 26/91 (28%), Positives = 45/91 (49%)
Frame = -2
Query: 527 SSQTQTYEVHNLRSCDV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVL 348
S+ + + +L DV +G+ D + V +GAA+++ R+ L QLVL
Sbjct: 102 SADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVL 161
Query: 347 SLLRGDTVDCESALNIID*TKQFISLLN*DN 255
D V ES+L ++D + FI+L + D+
Sbjct: 162 RFDSLDAVHNESSLGVVDEPEVFIALFDGDD 192
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 55.2 bits (127), Expect = 2e-06
Identities = 27/85 (31%), Positives = 42/85 (49%)
Frame = +1
Query: 13 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 192
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 193 RLIKVDGKVRTDPTYPAGFMELSQL 267
+ VDG R D +P G ++ L
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITL 87
Score = 33.9 bits (74), Expect = 4.2
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVS-RERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 679
KFE GNL M+ GG++ G G I+ RE + V I T F T + V +IG+
Sbjct: 167 KFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE 222
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 53.6 bits (123), Expect = 5e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +1
Query: 19 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 198
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 199 IKVDGKVRTD 228
+ ++G + TD
Sbjct: 64 VLLNGHIVTD 73
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 53.2 bits (122), Expect = 6e-06
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 7 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 183
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 184 VKQRLIKVDGKVRTDPTYPAGFMEL 258
+ + VDG+ D +P G ++
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLFDV 90
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 52.8 bits (121), Expect = 8e-06
Identities = 30/87 (34%), Positives = 42/87 (48%)
Frame = +3
Query: 264 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 443
IE E +R++Y+ +G + + T E A KL KV+ P N L THDGRT D
Sbjct: 86 IEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDD 145
Query: 444 PLIKVNDSIQLDIATTKIMDFISLSLG 524
KV D + + KI + I + G
Sbjct: 146 KSKKVGDVWAVSVPDMKISEIIKMQPG 172
Score = 43.6 bits (98), Expect = 0.005
Identities = 22/83 (26%), Positives = 42/83 (50%)
Frame = +1
Query: 19 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 198
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 199 IKVDGKVRTDPTYPAGFMELSQL 267
+KVDGK + + GFM++ ++
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEI 88
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 52.0 bits (119), Expect = 1e-05
Identities = 23/91 (25%), Positives = 48/91 (52%)
Frame = +1
Query: 19 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 198
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 199 IKVDGKVRTDPTYPAGFMELSQLRRLMNCFV 291
+KVDG++ D +P GFM++ + L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 37.5 bits (83), Expect = 0.34
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTI 431
V+SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+TI
Sbjct: 86 VLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTI 144
Query: 432 RYPDPLIKVNDSIQLDIATTKIMDFISLSLG 524
I +D + + I +I + + ++ G
Sbjct: 145 VTDRKDINTSDVLLMKIPDLEIENVLKIAEG 175
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 50.8 bits (116), Expect = 3e-05
Identities = 28/89 (31%), Positives = 47/89 (52%)
Frame = +1
Query: 10 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 189
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 190 QRLIKVDGKVRTDPTYPAGFMELSQLRRL 276
QR + V+G+ D G ++ + +L
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKL 90
Score = 39.9 bits (89), Expect = 0.064
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = +3
Query: 246 IYGVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 425
++ +VSI K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 81 VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140
Query: 426 TIRYPDPLIKVNDSIQLDIAT 488
+ D K DS+ + + T
Sbjct: 141 NV-LADNTYKAKDSVVVTLGT 160
Score = 39.5 bits (88), Expect = 0.084
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 512 FESGNLCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIGKGT 685
+ GN+ MI GG++ G+VG IV R S ++ DS G F T VF++G+
Sbjct: 174 YAEGNVAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVGRSA 233
Query: 686 KA 691
A
Sbjct: 234 IA 235
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/82 (28%), Positives = 41/82 (50%)
Frame = +1
Query: 13 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 192
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 193 RLIKVDGKVRTDPTYPAGFMEL 258
+ ++GK +D P G ++
Sbjct: 63 DNVLINGKAISDEERPVGMFDI 84
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +3
Query: 258 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 437
+S N+ +R++ G+ T++ I E K+CKV ++ ++T D R ++
Sbjct: 90 ISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKI 149
Query: 438 PDPLIKVNDSIQLDIATTKIMDFISLSLGT-CV*SR 542
IKV DS+ + +I+ + +G+ C+ +R
Sbjct: 150 NYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITR 185
Score = 42.7 bits (96), Expect = 0.009
Identities = 18/65 (27%), Positives = 36/65 (55%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KFE G+LC+IT G++LG + I + ++H++ G + +++ +IG+
Sbjct: 174 KFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKT 233
Query: 689 AYISL 703
+ +SL
Sbjct: 234 SILSL 238
Score = 41.1 bits (92), Expect = 0.028
Identities = 23/85 (27%), Positives = 40/85 (47%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
G KKH KR+++ K G++ + S+GPH + + L+ ++ A E K
Sbjct: 4 GIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQK 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFME 255
+VK + V+GK +P M+
Sbjct: 64 VVKTGFLYVNGKKCLSHKFPISLMD 88
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 43.6 bits (98), Expect = 0.005
Identities = 25/79 (31%), Positives = 39/79 (49%)
Frame = +1
Query: 19 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 198
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 199 IKVDGKVRTDPTYPAGFME 255
+ VDGKV + GFM+
Sbjct: 66 VMVDGKVVKERRRGIGFMD 84
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 43.2 bits (97), Expect = 0.007
Identities = 25/86 (29%), Positives = 38/86 (44%)
Frame = +1
Query: 10 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 189
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 190 QRLIKVDGKVRTDPTYPAGFMELSQL 267
++VDG RT + G M++ +L
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVEL 93
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 42.7 bits (96), Expect = 0.009
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = -3
Query: 733 DGEADALAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQ 554
D + D L R+R RL LA+ EH+ Q + + G+L+V ++G + L D ++T
Sbjct: 99 DRQLDXLTLRKRYPRLCPLANDEHIAQTSCKFMPSGILNVDGLKGPLVLLPVLDDSNTAP 158
Query: 553 VTASRDHTQVPRLK 512
V ++ H +P +K
Sbjct: 159 VPSTSHHDNIPNIK 172
>UniRef50_Q8BY81 Cluster: 3 days neonate thymus cDNA, RIKEN
full-length enriched library, clone:A630024D08
product:hypothetical Histidine-rich region containing
protein, full insert sequence; n=1; Mus musculus|Rep: 3
days neonate thymus cDNA, RIKEN full-length enriched
library, clone:A630024D08 product:hypothetical
Histidine-rich region containing protein, full insert
sequence - Mus musculus (Mouse)
Length = 139
Score = 37.5 bits (83), Expect = 0.34
Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 562 CGHHRVPRETSR-LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 732
C HH R LLR + G H RH +R H RQ EGV R+GHP HH
Sbjct: 55 CAHHLSADPAERVLLRGVSPPGEALGHQRHY--ERQHVRQHVEGVGQHGERRGHPAHH 110
>UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1;
Gallus gallus|Rep: PREDICTED: similar to MEGF6 - Gallus
gallus
Length = 1119
Score = 35.9 bits (79), Expect = 1.0
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Frame = -2
Query: 725 GGCP--CRAAARCTPSCPCRL*TRCSTSWRRCVPWSP*CAQ----CRR-SRDVSRGTRWC 567
GGC C C CR R RRC PWSP CAQ C + RDV +G C
Sbjct: 128 GGCEHDCVQLTANQHQCRCRRQYRLREDGRRCAPWSP-CAQRNGGCMQLCRDV-QGAARC 185
Query: 566 PHAPSYGL 543
P Y L
Sbjct: 186 ECRPGYRL 193
>UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: VrrB
- Bacillus anthracis
Length = 115
Score = 35.9 bits (79), Expect = 1.0
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 607 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVH----LAAARQGHPPHH 732
H HQG HG H H +Q+VH+ GH +H L QGH HH
Sbjct: 41 HHHHQGHHGHHGHH--QQQVHH-HGHHHIHPQAILYQTHQGHQGHH 83
Score = 34.3 bits (75), Expect = 3.2
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = +1
Query: 607 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 732
H HQG HG H H H+ QGH G H QGH HH
Sbjct: 17 HQGHQGHHG-HQGH------HHHQGHHGHHGHHHHQGHHGHH 51
>UniRef50_Q2VZ09 Cluster: Predicted SAM-dependent methyltransferase;
n=4; Rhodospirillaceae|Rep: Predicted SAM-dependent
methyltransferase - Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264)
Length = 820
Score = 35.1 bits (77), Expect = 1.8
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +1
Query: 616 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 735
H+G TH R + RQGH+ V AA R GHP HHR
Sbjct: 24 HRGDQETHDRIGPQLVPGTRQGHQAVDHAAPR-GHPQHHR 62
>UniRef50_A7ATI1 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 546
Score = 35.1 bits (77), Expect = 1.8
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 649 EVEQRVHNRQ---GHEGVHLAAARQGHPPHHRR 738
E Q+VH R+ G E +HL + HPPHHR+
Sbjct: 441 EYVQKVHEREMKSGEEAIHLPNSGTHHPPHHRK 473
>UniRef50_A7CME0 Cluster: Putative uncharacterized protein
precursor; n=1; Ralstonia pickettii 12D|Rep: Putative
uncharacterized protein precursor - Ralstonia pickettii
12D
Length = 533
Score = 34.7 bits (76), Expect = 2.4
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 541 GRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQ-RVHNRQGHEG-VHLAAARQ 714
G+P + A HRV +E + R H+ + H+ EQ RVH R G EG + A Q
Sbjct: 317 GKPAVQALEAHRVDQERADRRRDAPHRNVQRFHVDARAEQERVHQRDGAEGHEDVFAEEQ 376
Query: 715 GH 720
H
Sbjct: 377 AH 378
>UniRef50_A5G642 Cluster: Beta-ketoacyl synthase; n=1; Geobacter
uraniumreducens Rf4|Rep: Beta-ketoacyl synthase -
Geobacter uraniumreducens Rf4
Length = 7157
Score = 34.3 bits (75), Expect = 3.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 440 RPTYQSQRFHPVRHRNYEDYGLHKFES 520
+P YQ QR HP+ H+N D+ +F S
Sbjct: 1477 KPEYQEQRIHPLLHQNASDFSEQRFSS 1503
>UniRef50_Q9KI91 Cluster: VrrB; n=17; Bacteria|Rep: VrrB - Bacillus
anthracis
Length = 265
Score = 33.9 bits (74), Expect = 4.2
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 607 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 738
H HQG HG H H + GH+G H GH HH++
Sbjct: 128 HHHHQGHHGHHGHHHHQ----GHHGHQGHHHHQGHHGHHGHHQQ 167
Score = 33.1 bits (72), Expect = 7.3
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = +1
Query: 607 HCAHQGLHGTHLR--HEVEQRVHNRQGHEGVHLAAARQGHPPHH 732
H H G HG H H H+ QGH G QGH HH
Sbjct: 119 HQGHHGHHGHHHHQGHHGHHGHHHHQGHHGHQGHHHHQGHHGHH 162
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 33.9 bits (74), Expect = 4.2
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 535 DHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHE 687
DH R A HR R RL + H+G+ L+H++EQ +G +
Sbjct: 60 DHQRLFKAALARHRKSRRDQRLHKSLRHKGIAQAELQHKIEQDYQETKGQK 110
>UniRef50_UPI00006A1FE8 Cluster: Coiled-coil domain-containing protein
35; n=1; Xenopus tropicalis|Rep: Coiled-coil
domain-containing protein 35 - Xenopus tropicalis
Length = 957
Score = 33.5 bits (73), Expect = 5.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 598 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 738
LLRHC + T L++ Q V +++ HE + Q + PHH R
Sbjct: 893 LLRHCGPEASSETELQNTGPQVVASQKTHEKLDNLPTDQANTPHHHR 939
>UniRef50_Q5QMN1 Cluster: Putative uncharacterized protein
P0419B01.9; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0419B01.9 - Oryza sativa subsp. japonica (Rice)
Length = 123
Score = 33.5 bits (73), Expect = 5.5
Identities = 29/67 (43%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Frame = -2
Query: 716 PC-RAAARCTPSC---PCRL*TR-------CSTSWRRCV-PWSP*CAQ--CRRSRDVSRG 579
PC RAAA C P C PCR R C + CV P SP CA CRR R R
Sbjct: 41 PCVRAAAPCVPPCTSRPCRRPRRHLRPPSACVRAAALCVPPSSPPCASRPCRRPRHRLRP 100
Query: 578 TRWCPHA 558
C HA
Sbjct: 101 PAACVHA 107
>UniRef50_Q0DW21 Cluster: Os03g0101400 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os03g0101400 protein -
Oryza sativa subsp. japonica (Rice)
Length = 361
Score = 33.5 bits (73), Expect = 5.5
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 607 HCAHQGLHGTHLRH-EVEQRVHNRQGHEGVHLAAARQGHPPHHRR 738
H HQ LH +H + Q VH+R H R+ HP HHRR
Sbjct: 128 HLRHQHLHPSHQQQPPPPQPVHHRHRHH----VRRRRAHPRHHRR 168
>UniRef50_A7TPB7 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 228
Score = 33.5 bits (73), Expect = 5.5
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 568 HHRV-PRETSRLLRHCAHQGLHGTH-LRHEVEQRVH-NRQGHEGVHLAAARQGHPPHHRR 738
HH + P + + L H HQ LH TH L H + Q + Q H +H PHH R
Sbjct: 95 HHTLQPPQVTVQLHHHIHQHLHHTHQLHHHIHQLLQVIVQHHHPIHQHHHHTHQHPHHIR 154
>UniRef50_A5WHY9 Cluster: TonB-dependent receptor; n=1;
Psychrobacter sp. PRwf-1|Rep: TonB-dependent receptor -
Psychrobacter sp. PRwf-1
Length = 836
Score = 33.1 bits (72), Expect = 7.3
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +1
Query: 571 HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPH 729
HR+ R T L H H H H+ E+ H GHE GH H
Sbjct: 314 HRINRLTCGLDEHEHGAHEHHDHEEHDHEEHEHEEHGHEAHEHGHEEHGHQEH 366
>UniRef50_Q2R2L4 Cluster: Leucine Rich Repeat family protein,
expressed; n=3; Oryza sativa|Rep: Leucine Rich Repeat
family protein, expressed - Oryza sativa subsp. japonica
(Rice)
Length = 1026
Score = 32.7 bits (71), Expect = 9.7
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 385 DLRMFRTW*RMMAA-PSATQTHLSKSTIPSS*TSQLRRL 498
DL R W +A PS T HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>UniRef50_Q8SZT1 Cluster: GH27708p; n=18; Eumetazoa|Rep: GH27708p -
Drosophila melanogaster (Fruit fly)
Length = 647
Score = 32.7 bits (71), Expect = 9.7
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 568 HHRVPRETSRLLRHCAH-QGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHP--PHH 732
HH+ ++ + +H H Q H H +H ++Q+ +Q H GHP PHH
Sbjct: 123 HHQQQQQHQQQQQHQQHLQQHHQAHHQHVLQQQQQQQQQHSQHQHQQQHHGHPLHPHH 180
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 9.7
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +1
Query: 46 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 207
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 838,024,378
Number of Sequences: 1657284
Number of extensions: 19076382
Number of successful extensions: 63421
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 59232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63258
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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