Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10496
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 144 9e-36
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 144 1e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 143 2e-35
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 30 0.40
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.52
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 28 1.2
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 28 1.6
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 2.1
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.7
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 4.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.9
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 8.5
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 25 8.5
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.5
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 144 bits (350), Expect = 9e-36
Identities = 63/91 (69%), Positives = 74/91 (81%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
GPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMELSQLRR 273
I+ QRLIKVDGKVRTD T+P GFM++ + +
Sbjct: 64 ILMQRLIKVDGKVRTDSTFPTGFMDVISVEK 94
Score = 143 bits (347), Expect = 2e-35
Identities = 64/85 (75%), Positives = 74/85 (87%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
V+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIR
Sbjct: 89 VISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIR 148
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFI 509
YPDPLIKVND+I+L++ T KI FI
Sbjct: 149 YPDPLIKVNDTIKLNLETNKIESFI 173
Score = 105 bits (251), Expect = 9e-24
Identities = 45/75 (60%), Positives = 62/75 (82%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGK 233
Query: 689 AYISLPRGKGIRLTI 733
++ISLP+GKG++L+I
Sbjct: 234 SWISLPKGKGVKLSI 248
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 144 bits (349), Expect = 1e-35
Identities = 63/86 (73%), Positives = 72/86 (83%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
GPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMEL 258
I+ QRLIKVDGKVRTD T+P GFM++
Sbjct: 64 ILMQRLIKVDGKVRTDSTFPTGFMDV 89
Score = 142 bits (344), Expect = 5e-35
Identities = 63/85 (74%), Positives = 74/85 (87%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
V+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIR
Sbjct: 89 VISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIR 148
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFI 509
YPDPLIKVND+I+L++ T KI FI
Sbjct: 149 YPDPLIKVNDTIKLNLETNKIESFI 173
Score = 105 bits (251), Expect = 9e-24
Identities = 45/75 (60%), Positives = 62/75 (82%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGK 233
Query: 689 AYISLPRGKGIRLTI 733
++ISLP+GKG++L+I
Sbjct: 234 SWISLPKGKGVKLSI 248
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 143 bits (347), Expect = 2e-35
Identities = 64/85 (75%), Positives = 74/85 (87%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
V+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIR
Sbjct: 89 VISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIR 148
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFI 509
YPDPLIKVND+I+L++ T KI FI
Sbjct: 149 YPDPLIKVNDTIKLNLETNKIESFI 173
Score = 143 bits (346), Expect = 3e-35
Identities = 62/91 (68%), Positives = 74/91 (81%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
GPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMELSQLRR 273
I+ QRLI+VDGKVRTD T+P GFM++ + +
Sbjct: 64 ILMQRLIQVDGKVRTDSTFPTGFMDVISVEK 94
Score = 105 bits (253), Expect = 5e-24
Identities = 45/75 (60%), Positives = 62/75 (82%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K
Sbjct: 174 KFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGK 233
Query: 689 AYISLPRGKGIRLTI 733
++ISLP+GKG++L+I
Sbjct: 234 SWISLPKGKGVKLSI 248
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 29.9 bits (64), Expect = 0.40
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +1
Query: 115 LPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFM--ELSQLRRLMNCF 288
LPLV ++ + + N L IV Q L+ V Y + ELS+++ L+NCF
Sbjct: 376 LPLVKQYDHKFRNLYSPNIFLSIV-QALVFCGDMVNIQRWYNMSRVNSELSRIKHLLNCF 434
Query: 289 V*SMMLRADSQSTVSPLRRLSTSCVK 366
+ S + D + LR L +K
Sbjct: 435 LNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.52
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -3
Query: 697 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 572
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 452 QSQRFHPVRHRNYEDYGLHKFES 520
++++ HPVRH YED FE+
Sbjct: 5 ENEKIHPVRHSKYEDKSKLPFET 27
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/84 (25%), Positives = 36/84 (42%)
Frame = -3
Query: 709 ARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHT 530
A++ D R + H V+PR + + G + + A S G TPQ D+
Sbjct: 269 AQKADSNNRDTSLKSHFVEPRTQALRPGARLTYKLREARSSKRGES---TPQSFREEDNN 325
Query: 529 QVPRLKLMKSIIFVVAMSNWMESL 458
+ LKL ++++A E+L
Sbjct: 326 LMELLKLFGKGVYLLAQYKLREAL 349
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -1
Query: 246 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 91
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 613
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 419 WPHHPLPRPTYQSQR 463
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRTI 431
V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H +
Sbjct: 1719 VSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEML 1778
Query: 432 R 434
+
Sbjct: 1779 K 1779
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 422 PHHPLPRPTYQSQRFHPVRHRNYEDY 499
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 25.4 bits (53), Expect = 8.5
Identities = 20/86 (23%), Positives = 33/86 (38%)
Frame = -3
Query: 325 WIVNLPLTS*IRRNSSLVFSIETTP*IQQDK*GQS*LSHQPL*GVVSQFSGLRFRSKHTS 146
W+V + SL+ P ++ K G + + G + + L ++ HTS
Sbjct: 237 WLVEFSSVCQAAESISLIAVNNNRPPVELPKSGDVLSNREWEAGKIDAMNSLIAQNLHTS 296
Query: 145 DDSSGKSPGASTRATCGDRLTVSVHT 68
SP AST ++ V HT
Sbjct: 297 ASQVSLSPMASTASSSVTNSPVDTHT 322
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 347 SLLRGDTVDCESALNIID*TKQ 282
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,088
Number of Sequences: 5004
Number of extensions: 73134
Number of successful extensions: 222
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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