Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10496
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             166   1e-41
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   5.2  
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   5.2  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                28   6.9  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  166 bits (404), Expect = 1e-41
 Identities = 74/86 (86%), Positives = 80/86 (93%)
 Frame = +1

Query: 1   GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
           GPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV K
Sbjct: 428 GPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKK 487

Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMEL 258
           IVKQRLIK+DGKVRTD TYPAGFM++
Sbjct: 488 IVKQRLIKIDGKVRTDTTYPAGFMDV 513



 Score =  132 bits (318), Expect = 4e-31
 Identities = 59/90 (65%), Positives = 72/90 (80%)
 Frame = +3

Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
           VV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTIR
Sbjct: 513 VVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIR 572

Query: 435 YPDPLIKVNDSIQLDIATTKIMDFISLSLG 524
           YPDP IKVND++ +DI T K++D+I    G
Sbjct: 573 YPDPNIKVNDTVVIDIKTGKVIDYIKFDTG 602



 Score =  126 bits (305), Expect = 1e-29
 Identities = 51/76 (67%), Positives = 66/76 (86%)
 Frame = +2

Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
           KF++GN+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K
Sbjct: 598 KFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNK 657

Query: 689 AYISLPRGKGIRLTIA 736
            Y+SLP+GKG+RL+IA
Sbjct: 658 PYVSLPKGKGVRLSIA 673


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = -3

Query: 724  ADALAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTA 545
            A+A    QR+ RLR L D    + P  +   R V+    +E A + L     AH  +  +
Sbjct: 1184 AEAWTQEQREARLRELKDKLVALDPADKDQKRSVM----LEAAAIKLVSRK-AHLAK--S 1236

Query: 544  SRDHTQVPRLKLMKSII 494
              D ++VPR ++M S+I
Sbjct: 1237 REDGSEVPRDEVMISLI 1253


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +3

Query: 135 EES--SEVCFDRKRSPENCE 188
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +1

Query: 562 CGH-HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 735
           C H H +  +    + H +H  LH TH+  E  +    R G  G      R    PH+R
Sbjct: 18  CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG--RKGHRNHKEPHNR 74


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +1

Query: 568 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 738
           HH  P     +LRH  H+  +  H RH      H+R  H   H       H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -2

Query: 212 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 96
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,589,770
Number of Sequences: 59808
Number of extensions: 620847
Number of successful extensions: 1877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1870
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)