Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10496
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 145 2e-35
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 145 2e-35
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 145 2e-35
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.80
At1g29760.1 68414.m03639 expressed protein 31 0.80
At1g15780.1 68414.m01893 expressed protein 30 1.4
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 2.4
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 3.2
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 3.2
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 3.2
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 29 4.3
At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putativ... 28 5.6
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 28 5.6
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 28 5.6
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 28 5.6
At3g56260.1 68416.m06252 expressed protein 28 5.6
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 7.4
At2g40760.1 68415.m05028 rhodanese-like domain-containing protei... 28 7.4
At5g52440.1 68418.m06507 HCF106 protein identical to HCF106 [Ara... 27 9.8
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 145 bits (352), Expect = 2e-35
Identities = 65/86 (75%), Positives = 75/86 (87%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
G KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+
Sbjct: 4 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVIS 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMEL 258
I+ QR I+VDGKVRTD TYPAGFM++
Sbjct: 64 ILMQRHIQVDGKVRTDKTYPAGFMDV 89
Score = 128 bits (310), Expect = 3e-30
Identities = 58/93 (62%), Positives = 71/93 (76%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
VVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIR
Sbjct: 89 VVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIR 148
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFISLSLGTCV 533
YPDPLIK ND+I+LD+ KI++FI +G V
Sbjct: 149 YPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181
Score = 118 bits (285), Expect = 3e-27
Identities = 51/75 (68%), Positives = 64/75 (85%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK
Sbjct: 174 KFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
Query: 689 AYISLPRGKGIRLTI 733
++SLP+GKGI+LTI
Sbjct: 234 PWVSLPKGKGIKLTI 248
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 145 bits (352), Expect = 2e-35
Identities = 65/86 (75%), Positives = 75/86 (87%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
G KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+
Sbjct: 4 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVIS 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMEL 258
I+ QR I+VDGKVRTD TYPAGFM++
Sbjct: 64 ILMQRHIQVDGKVRTDKTYPAGFMDV 89
Score = 128 bits (309), Expect = 4e-30
Identities = 58/93 (62%), Positives = 71/93 (76%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
VVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIR
Sbjct: 89 VVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIR 148
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFISLSLGTCV 533
YPDPLIK ND+I+LD+ KI++FI +G V
Sbjct: 149 YPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 118 bits (285), Expect = 3e-27
Identities = 51/75 (68%), Positives = 64/75 (85%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK
Sbjct: 174 KFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
Query: 689 AYISLPRGKGIRLTI 733
++SLP+GKGI+LTI
Sbjct: 234 PWVSLPKGKGIKLTI 248
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 145 bits (352), Expect = 2e-35
Identities = 65/86 (75%), Positives = 75/86 (87%)
Frame = +1
Query: 1 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 180
G KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+
Sbjct: 4 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVIS 63
Query: 181 IVKQRLIKVDGKVRTDPTYPAGFMEL 258
I+ QR I+VDGKVRTD TYPAGFM++
Sbjct: 64 ILMQRHIQVDGKVRTDKTYPAGFMDV 89
Score = 128 bits (309), Expect = 4e-30
Identities = 58/93 (62%), Positives = 71/93 (76%)
Frame = +3
Query: 255 VVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 434
VVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIR
Sbjct: 89 VVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIR 148
Query: 435 YPDPLIKVNDSIQLDIATTKIMDFISLSLGTCV 533
YPDPLIK ND+I+LD+ KI++FI +G V
Sbjct: 149 YPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 118 bits (285), Expect = 3e-27
Identities = 51/75 (68%), Positives = 64/75 (85%)
Frame = +2
Query: 509 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 688
KF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK
Sbjct: 174 KFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
Query: 689 AYISLPRGKGIRLTI 733
++SLP+GKGI+LTI
Sbjct: 234 PWVSLPKGKGIKLTI 248
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 116 KHSRNLWGPVDGLGAYTPPSLSNIHAL 36
KHS +LWG D L TPP+ ++ L
Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70
>At1g29760.1 68414.m03639 expressed protein
Length = 526
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 227 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 135
S+LTFP +R CF F F + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 715 LAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEG 599
L ARQ+ +L+ + D + +G VSRG+ H+++G
Sbjct: 865 LQARQQAAQLQQMNDMNDLTSRQGMNVSRGMFQQHSMQG 903
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 681 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 586
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 681 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 586
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
putative / steroid 5-alpha-reductase, putative identical
to gi:1280611; contains a steroid 5-alpha reductase,
C-terminal domain
Length = 262
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 206 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 90
TF R C + P A +FL+ GKH+R WGP
Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 681 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 586
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 545 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKAYISL 703
G NL + + + R P +V + HT A T NNVF G+GT + +
Sbjct: 311 GNNLDQCSPV--QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362
>At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putative /
glutamine phosphoribosylpyrophosphate amidotransferase,
putative / phosphoribosyldiphosphate 5-amidotransferase,
putative similar to amidophosphoribosyltransferase
[Arabidopsis thaliana] GI:469195; contains Pfam profiles
PF00156: Phosphoribosyl transferase domain, PF00310:
Glutamine amidotransferases class-II
Length = 532
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +2
Query: 467 HPVRHRNYEDYGLHKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA 646
H ++HR E G+ L ITG + V T PG I H++ ST + A
Sbjct: 97 HALQHRGQEGAGIVAANQNGLESITGVGLVSDVFTESKLNNLPGDIAIGHVRYST--SGA 154
Query: 647 TRLNNV 664
+ L NV
Sbjct: 155 SMLKNV 160
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 139 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMELSQLRRL 276
N ++A+T NE+ +K+RL D ++R D Y G E++ +L
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEKL 749
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 139 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMELSQLRRL 276
N ++A+T NE+ +K+RL D ++R D Y G E++ +L
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEKL 749
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 139 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMELSQLRRL 276
N ++A+T NE+ +K+RL D ++R D Y G E++ +L
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEKL 750
>At3g56260.1 68416.m06252 expressed protein
Length = 176
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 422 PHHPLPRPTYQSQRFHPVRHRNYEDYGLHKFESGNLCMITGGRNLGRVGTI--VSRERHP 595
P H L + ++ P+ + NYE+ L + LC GGR LG ++ V+R
Sbjct: 95 PPHSLKKRMSHDKK-SPLLYANYEEDELRSSPTSTLCCSNGGR-LGCSSSMGSVTRALFS 152
Query: 596 GSFDIVHIKDSTG 634
GS + + ++TG
Sbjct: 153 GSMEGMKRHETTG 165
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 681 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 586
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
>At2g40760.1 68415.m05028 rhodanese-like domain-containing protein
contains rhodanese-like domain PF00581
Length = 474
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 721 DALAARQRDVRLRALADYEHVVQPRGEGVSRG 626
+ LA QRDVRL L E V P E + G
Sbjct: 158 EVLAFIQRDVRLNGLRQVETPVSPEQEAIHHG 189
>At5g52440.1 68418.m06507 HCF106 protein identical to HCF106
[Arabidopsis thaliana] GI:4894914; contains Pfam profile
PF02416: mttA/Hcf106 family
Length = 260
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = +3
Query: 384 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFISLSLGTCV*SREAVTWGV 563
GPK + + + G+T+R P I+ + D +T + + T + T V
Sbjct: 106 GPKGLAEVARNLGKTLRTFQPTIRELQDVSRDFKSTLEREIGLDDISTPNVYNQNRTNPV 165
Query: 564 W-APSCPARDIPAPSTLCTSRTPRDTPSPRG*T 659
P P +P+ T+ P D+ SP+ T
Sbjct: 166 QPPPPPPPPSVPSTEAPVTANDPNDSQSPKAYT 198
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,081,572
Number of Sequences: 28952
Number of extensions: 416101
Number of successful extensions: 1310
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -