Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10495
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    29   0.57 
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    27   4.0  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.3  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   9.3  

>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 14/65 (21%), Positives = 27/65 (41%)
 Frame = +1

Query: 457 RTVVPKMAHRHQPSEKYSVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGV 636
           R ++   AH+H PS+K  +  +                   +TL   P+ +A  + ++G+
Sbjct: 34  RVIIKSNAHKHDPSDKRQIWLEKYYLFVRQIYTYLVTHKVILTLIAVPVVFAISIPFIGM 93

Query: 637 TLDAS 651
              AS
Sbjct: 94  QTPAS 98


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 249 DSISKRAVRQEVPYDEHETIRHAHVE*FENQTIVPDFVERFCDVEEESS 103
           +S+   +  + VP  +HE I     +  E+ T +P  ++R C++ +ESS
Sbjct: 275 NSLDNESCVRVVPSFDHEEIGSVSAQGAES-TFLPAVLQRICELGKESS 322


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +1

Query: 256 PAPPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSPTTRLFT 399
           PAPP+  +        SS PS    +S  FP       L+SPT R  T
Sbjct: 238 PAPPNS-NNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLT 284


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 262 PPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSPT 384
           PPH+ SQ +S    +  PS+ +      P   +P  +  PT
Sbjct: 508 PPHNYSQAQSPNLATPSPSFSSLPDVSLPPIVKPNLMSEPT 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,766
Number of Sequences: 5004
Number of extensions: 70518
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)