Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10495
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 31 1.0
04_04_1501 + 34020278-34020499,34021066-34021187,34021605-340217... 30 1.8
12_02_0579 + 20764626-20765123,20765135-20766064,20767181-207672... 29 4.2
04_04_1248 - 32051679-32052356,32053617-32053778,32054147-320542... 29 4.2
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 28 7.3
02_04_0542 - 23762549-23762961,23763051-23763453 28 7.3
01_06_1724 - 39452858-39454309 28 7.3
01_01_0693 + 5355081-5355106,5355969-5356056,5356079-5356141,535... 28 7.3
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686... 28 9.7
04_03_0028 + 9698427-9698849,9698862-9699227 28 9.7
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 235 FRYRIE-GPAPPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSP 381
F Y ++ P P + +++ +K + +PS L+ S F GR+ LYSP
Sbjct: 232 FHYNVDISPRPSKETARMIKKKLVEENPSVLSGSQPAFDGRKN---LYSP 278
>04_04_1501 +
34020278-34020499,34021066-34021187,34021605-34021701,
34021964-34022180,34022431-34022483,34022839-34022949
Length = 273
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 151 NGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRIEGPAP 264
NG+ +LF + D +LIIRD R+EGP P
Sbjct: 220 NGMFQRLFMISYLDEEILIIRDASGAPDVLTRLEGPQP 257
>12_02_0579 +
20764626-20765123,20765135-20766064,20767181-20767275,
20767342-20767384,20767869-20768231
Length = 642
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +2
Query: 422 NREEASERSLALGQWFRKWRIDINPAKSTRCYFRGEAPHGFPPGLGGG 565
+R EA +G W R + P ST C GEA G GGG
Sbjct: 145 HRHEADVTPSLVGSWLRFAERHLRPRASTECGGGGEAGSRGSGGGGGG 192
>04_04_1248 -
32051679-32052356,32053617-32053778,32054147-32054269,
32054686-32054793
Length = 356
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 200 TRLSGTPMLNSLKIKPLCQTLSNAFATSKKRAPVYNGFGRLSP 72
T LS +P L+ L +KP A T+K V G G LSP
Sbjct: 136 TNLSISPSLSLLHVKPRTSAKPTASTTAKNARRVGVGAGSLSP 178
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 461 QWFRKWRIDINPAKSTRCYFRGEAPHGFPPGLGGGI 568
+WF K R+D++P + +R + PH P L I
Sbjct: 774 KWFFKERLDVDPKEESRTFLTFVIPHEKEPLLTANI 809
>02_04_0542 - 23762549-23762961,23763051-23763453
Length = 271
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 267 GRSGSLDSISKRAVRQEVPYDEHETIRHAHVE 172
GR+GS+D SKR + + HETI+ ++E
Sbjct: 110 GRTGSVDD-SKREIAAFFAHANHETIKFCYIE 140
>01_06_1724 - 39452858-39454309
Length = 483
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 621 QVPGRYPGCIDDIPPAYKISP*PCRVY 701
QVPG++P CI AY++ P PC Y
Sbjct: 333 QVPGQHPPCI-----AYQMPPPPCLAY 354
>01_01_0693 +
5355081-5355106,5355969-5356056,5356079-5356141,
5356607-5356705
Length = 91
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +1
Query: 16 RTNHSCVQQVHRLTEHILVGLN--RPKPLYTGALFFDVAKAFDKVWHNGLIFKLFN 177
RTN CV++ + +LVG N K + G L VA D W G I N
Sbjct: 21 RTNGKCVKETEAIRSELLVGENGINDKQIKKGLL---VASRVDGEWSRGTIGDALN 73
>08_02_0592 +
19064025-19066596,19067036-19067084,19068530-19068605,
19068767-19068922
Length = 950
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -3
Query: 292 GTPAVRGRGEERVPRFDIEKSGSTRSPV**ARDYPAR 182
GT VRGRGE+ E G+ +PV A PAR
Sbjct: 45 GTSRVRGRGEKGTTHGGAEGEGAVVAPVRTADAVPAR 81
>04_03_0028 + 9698427-9698849,9698862-9699227
Length = 262
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 167 LKIKPLCQTLSNAFATSKKRAPVY--NGFGRLSP 72
L++KPL Q L NAF K APV F ++ P
Sbjct: 226 LELKPLPQGLHNAFLHGDKEAPVVISTSFPKMKP 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,154,571
Number of Sequences: 37544
Number of extensions: 525706
Number of successful extensions: 1514
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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