Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10495
(786 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 45 7e-05
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 40 0.003
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 40 0.003
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 39 0.004
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 36 0.033
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 35 0.057
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 35 0.076
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/47 (42%), Positives = 34/47 (72%)
Frame = +1
Query: 109 LFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRI 249
++ D +KAFD++ H+ L+ KL ++ +L++ + +FLSNRSFR RI
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRI 63
Score = 35.5 bits (78), Expect = 0.043
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +3
Query: 255 TRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTHLAL--FADDTTVYYSSRNKSLIA 428
T SS + T GVPQG NDI P +A FADDT + Y+S K+
Sbjct: 66 TLSSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKL-YASTPKTESE 124
Query: 429 KKLQSAA*P*DSGSENGA*TSTQRKVLGAISEGKLHTDF 545
LQSA ++ T Q K + ++ GK DF
Sbjct: 125 NNLQSALDAVVDWTKGSKLTLNQSKTV-HVTVGKRRIDF 162
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +1
Query: 1 EQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNM 180
EQ GFR + S + +H L + VG PL +F D KAFD V H + L
Sbjct: 655 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTL--VFIDFKKAFDSVEHQAIWKSLDEQ 712
Query: 181 GVPDSLVLIIRDFLSN 228
G + + ++++ N
Sbjct: 713 GADGAYIDLLKECYKN 728
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +1
Query: 1 EQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNM 180
EQ GFR + S + +H L + VG PL +F D KAFD V H + L
Sbjct: 394 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTL--VFIDFKKAFDSVEHQAIWKSLDEQ 451
Query: 181 GVPDSLVLIIRDFLSN 228
G + + ++++ N
Sbjct: 452 GADGAYIDLLKECYKN 467
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +1
Query: 1 EQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNM 180
EQ GFR + S + +H L + VG PL +F D KAFD V H + L
Sbjct: 484 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTL--VFIDFKKAFDTVEHQAIWKSLDEQ 541
Query: 181 GVPDSLVLIIRDFLSN 228
G + + ++++ N
Sbjct: 542 GADGAYIDLLKECYKN 557
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -3
Query: 343 ISLTNKLNRRGERTEPCGTPAVRGRGEER 257
ISLTN GERT+PCGTP G E+
Sbjct: 50 ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 35.1 bits (77), Expect = 0.057
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 127 KAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRIEGPAPP--HDLSQLESRKA 300
KAFD+V H+ L+ KL + G+ DFLS+R+F ++ P H +S + +
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 301 LSSHPSYLAYSSTI 342
+S +L + +++
Sbjct: 62 VSGPFLFLIFINSL 75
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 598 PIPWARKVKYLGVTLDASMTFRPHIKSV 681
PI + + LG+ D+ +TF+PHIK +
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI 215
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 34.7 bits (76), Expect = 0.076
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +1
Query: 4 QFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGAL-FFDVAKAFDKVWHNGLIFKLFN- 177
Q GF+ HS V ++T I+ GLN P + D+ AFDKV L L
Sbjct: 436 QHGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKVPTKKLCNDLMEA 495
Query: 178 MGVPDSLVLIIRDFLSNRSFR 240
G+ + L + ++L R R
Sbjct: 496 QGIEPKIKLWLGNYLHKRLIR 516
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 276 LTAGVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQ 440
L GVPQG D+P T L +ADD ++ + A+K+Q
Sbjct: 529 LLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQ 583
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,793,850
Number of Sequences: 27780
Number of extensions: 412001
Number of successful extensions: 959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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