Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10495
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17260.1 68418.m02022 no apical meristem (NAM) family protein...    29   4.6  
At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containi...    29   4.6  
At3g03200.1 68416.m00316 no apical meristem (NAM) family protein...    29   4.6  

>At5g17260.1 68418.m02022 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 476

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 476 WRIDINPAKSTRCYFRGEAPHGFPPG 553
           WR      K T  Y+RG APHG   G
Sbjct: 100 WRDRAIGTKKTLVYYRGRAPHGIRTG 125


>At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 658

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 760 TLFRRTFYSAYRSWGRVYRE*TRHGHGL 677
           T+FRR     Y SW  +     RHGHGL
Sbjct: 413 TVFRRMPKRNYVSWNSMIAAFARHGHGL 440


>At3g03200.1 68416.m00316 no apical meristem (NAM) family protein
           similar to NAC2 (GI:6456751) {Arabidopsis thaliana}
          Length = 479

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 476 WRIDINPAKSTRCYFRGEAPHGFPPG 553
           WR      K T  Y+RG APHG   G
Sbjct: 92  WRDRAIGTKKTLVYYRGRAPHGIRTG 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,082
Number of Sequences: 28952
Number of extensions: 388794
Number of successful extensions: 1003
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)