Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10493
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    26   6.6  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    25   8.8  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   8.8  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   8.8  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   8.8  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   8.8  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   8.8  

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 396 HYYIPSFSPTPFIHISYYALIQHVHFKTILFLYLSSNSN 512
           +YY+P FS TP        L++  +F T +F   S N +
Sbjct: 548 YYYLPKFSDTP-------GLLEEAYFNTFVFRAFSKNES 579


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 208 NSLILLLDDWKTTFICELNHKELQSPVFVNPACKK*VYGYVAITKKI 348
           + L++ L D K  F CE   KEL+S   V  +C     GY+ + ++I
Sbjct: 319 SQLVVFLRDVKALFNCEYRFKELESGQ-VEMSCLG--KGYLNVNRRI 362


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 393 QHYYIPSFSPTPFIHISYYALIQHVHFKTILFLYLSSNSNY 515
           QH ++  F+PTP +   Y AL+ + H       Y + + NY
Sbjct: 184 QHSWV--FTPTPIMVFRYSALMFNAHMIHWNATYATKSENY 222


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +2

Query: 398 LLHTFVFANT---VHTYILLCFDTTCTF*NNFILIFK 499
           +LH F FA     + +YI+  F   C F N  +  FK
Sbjct: 29  VLHNFPFAARWLRICSYIMFGFALVCLFTNTIVFFFK 65


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +2

Query: 398 LLHTFVFANT---VHTYILLCFDTTCTF*NNFILIFK 499
           +LH F FA     + +YI+  F   C F N  +  FK
Sbjct: 29  VLHNFPFAARWLRICSYIMFGFALVCLFTNTIVFFFK 65


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 175 LKKISHMVKTVNSLILLLDDWKTTFIC 255
           +K ISH+    NS +   D WK   +C
Sbjct: 212 MKNISHLCTRKNSQVWGKDAWKKVVVC 238


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +2

Query: 398 LLHTFVFANT---VHTYILLCFDTTCTF*NNFILIFK 499
           +LH F FA     + +YI+  F   C F N  +  FK
Sbjct: 29  VLHNFPFAARWLRICSYIMFGFALVCLFTNTIVFFFK 65


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +2

Query: 398 LLHTFVFANT---VHTYILLCFDTTCTF*NNFILIFK 499
           +LH F FA     + +YI+  F   C F N  +  FK
Sbjct: 29  VLHNFPFAARWLRICSYIMFGFALVCLFTNTIVFFFK 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,028
Number of Sequences: 5004
Number of extensions: 59178
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)