Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10493
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_14855| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  

>SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -1

Query: 275 SSLWLSSQINVVFQSSNNNISEFTV----LTMCEIFFKSSALKFTL 150
           + +W  ++ N VF   + N+   TV    L +CE    +S+L FTL
Sbjct: 40  NEIWRRTRANTVFLQESWNMKSITVLLVPLLICEYILSASSLSFTL 85


>SB_14855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = -3

Query: 714 KCSNEFYTSFNITILLNNSKEAYFLRLNPLVVHLYYT*KDK*FKLNLNISRLFYCPCKRD 535
           K +N+ Y  F+ +  +NN   A  +  +P + + +Y   D   K+N +   LF    K +
Sbjct: 56  KINNDHYALFDTSPKINNDHYALLIDTSPKINNDHYALFDTSPKINNDHYALFDTSPKIN 115

Query: 534 TDFIYLYN*SSNLN 493
            D   L++ S  +N
Sbjct: 116 NDHYALFDTSPKIN 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,420,776
Number of Sequences: 59808
Number of extensions: 392630
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)