Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10491
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   116   3e-27
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   3.6  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   4.7  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   4.7  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   6.3  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   6.3  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   8.3  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  116 bits (278), Expect = 3e-27
 Identities = 49/87 (56%), Positives = 73/87 (83%)
 Frame = +2

Query: 2   FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHY 181
           F++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG  
Sbjct: 3   FSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRGSN 62

Query: 182 KGQQVGKVMQVYRKKFVVYIERIQKKR 262
           KG++ GK+  VYRKKF++ IER+ +++
Sbjct: 63  KGRE-GKITSVYRKKFLLLIERVTREK 88



 Score = 44.8 bits (101), Expect = 7e-06
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = +1

Query: 250 SKEKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRR 360
           ++EKANGA+A VGI  SK VI KL ++KDRK ++ R+
Sbjct: 85  TREKANGASAPVGIDASKVVITKLHLDKDRKDLIVRK 121


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 165 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 251
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 346 LLCGLYSSST*QSHTLKGECRHMLLHHWPFLLNPL 242
           L CGL        +   G CR + +HH  F +N L
Sbjct: 219 LFCGLLWGDYRGGYFYAGVCRLVFVHHATFCVNSL 253


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 283 VGIHPSKCV-IVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 405
           +GI P K    +K  + KDR A ++RR +G    +G D+  Y
Sbjct: 256 IGIDPEKFSDALKSDVVKDRIASIERRLQGVKVIVGVDRLDY 297


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 405 VFTLVFAKCSQSALCSAIEDCFAVFIH 325
           +F LV    S   +C  IED F   IH
Sbjct: 588 LFNLVATNASDPYICGIIEDTFEDIIH 614


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 213 CIVKSLLYTLRGFKRKGQWCNSICRHSP 296
           C  K LLY  R   R  +W N I   SP
Sbjct: 388 CCAKILLYARRQLTRMARWNNLIDDSSP 415


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 271 HHWPFLLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVF 146
           ++W F L      N+ F +H+H    L+  + S Y++ F+ F
Sbjct: 20  NYWHFWLRSFMSNNRKFLVHIH----LIPHLNSLYSICFLGF 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,308
Number of Sequences: 5004
Number of extensions: 39510
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)