Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10491
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0263 + 2136858-2137331 123 7e-29
12_01_0323 - 2459854-2460306 123 9e-29
11_01_0317 - 2365493-2365786,2365825-2365953 86 2e-17
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898... 29 1.6
08_01_0391 + 3443989-3444219 29 2.7
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 27 6.3
09_04_0483 + 17979566-17980019,17980242-17980321,17980431-179808... 27 6.3
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 6.3
03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816 27 6.3
>01_01_0263 + 2136858-2137331
Length = 157
Score = 123 bits (297), Expect = 7e-29
Identities = 57/86 (66%), Positives = 76/86 (88%)
Frame = +2
Query: 5 NKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYK 184
N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG YK
Sbjct: 4 NPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRGSYK 63
Query: 185 GQQVGKVMQVYRKKFVVYIERIQKKR 262
G++ GKV+QVYR+++V+++ERI +++
Sbjct: 64 GRE-GKVVQVYRRRWVIHVERITREK 88
Score = 70.1 bits (164), Expect = 9e-13
Identities = 33/52 (63%), Positives = 42/52 (80%)
Frame = +1
Query: 250 SKEKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 405
++EK NG+T VGIHPSK V+ KLK++KDRKAILDR+A+GR A K KGK+
Sbjct: 85 TREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AADKAKGKF 134
>12_01_0323 - 2459854-2460306
Length = 150
Score = 123 bits (296), Expect = 9e-29
Identities = 57/86 (66%), Positives = 76/86 (88%)
Frame = +2
Query: 5 NKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYK 184
N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG YK
Sbjct: 4 NPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRGSYK 63
Query: 185 GQQVGKVMQVYRKKFVVYIERIQKKR 262
G++ GKV+QVYR+++V+++ERI +++
Sbjct: 64 GRE-GKVVQVYRRRWVIHVERITREK 88
Score = 69.3 bits (162), Expect = 2e-12
Identities = 33/52 (63%), Positives = 41/52 (78%)
Frame = +1
Query: 250 SKEKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 405
++EK NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR A K KGK+
Sbjct: 85 TREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 134
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 85.8 bits (203), Expect = 2e-17
Identities = 46/86 (53%), Positives = 63/86 (73%)
Frame = +2
Query: 5 NKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYK 184
N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+N VVRG YK
Sbjct: 4 NPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYN-------------VVRGSYK 50
Query: 185 GQQVGKVMQVYRKKFVVYIERIQKKR 262
G++ GKV+QVYR+++V+++ERI +++
Sbjct: 51 GRE-GKVVQVYRRRWVIHVERITREK 75
Score = 69.3 bits (162), Expect = 2e-12
Identities = 33/52 (63%), Positives = 41/52 (78%)
Frame = +1
Query: 250 SKEKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 405
++EK NG+T VGIHPSK V+ KLK++KDRKAILDR+A GR A K KGK+
Sbjct: 72 TREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 121
>06_03_1161 -
28089177-28089359,28089473-28089700,28089776-28089814,
28090681-28090737,28090924-28091046
Length = 209
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Frame = +2
Query: 2 FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPI------RKDDEVQ 163
F + ++S++ ++F I+ + L + R+K S+P+ R D VQ
Sbjct: 43 FRLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTVQ 102
Query: 164 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQKK 259
V+ G KG +VG+V ++++ V ++ + K
Sbjct: 103 VIAGREKG-KVGEVTRLFKHNSTVIVKDLNLK 133
>08_01_0391 + 3443989-3444219
Length = 76
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 294 VNADICCCTIGLFF*ILSMYTTNFLRYTCITLPTCWPL 181
++AD+CCC+ L I + + L + C+ L TC+ L
Sbjct: 41 MDADLCCCSCALIG-IAATVAASLLAFKCL-LTTCYKL 76
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +3
Query: 282 CRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSH 428
C H+ K C C + E + Q+ R + Q ++ I R HS+
Sbjct: 479 CNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRSAVHSN 527
>09_04_0483 +
17979566-17980019,17980242-17980321,17980431-17980895,
17981460-17981597,17982574-17982660,17982781-17982909,
17983034-17983225,17983393-17983479,17983707-17984378
Length = 767
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 194 VGKVMQVYRKKFVVYIERIQKKRPMVQQ 277
+G ++ +YR F V ++ I+K +PMVQ+
Sbjct: 719 LGGMVVLYRVLFFVIVKLIEKMKPMVQR 746
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 104 ELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERI 250
E KF + P K D +Q+V + + QQ + V K+F +YI +
Sbjct: 1278 ETTWKFLATTNPYEKVDRLQIVSEYMEIQQTDGHVDVSAKEFKMYISSL 1326
>03_02_0095 + 5593353-5593638,5593739-5594130,5594316-5594816
Length = 392
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 152 DEVQVVRGHYKGQQVGKVMQVYRKKFVVYIER--IQKKRPMVQQHMSAFTLQSV*LSS*R 325
D+ +V + ++ ++QV R VY+++ I K PM+QQ + F L+ +S+
Sbjct: 207 DDSHIVLNTHGVWRIKGIIQVSRSIGDVYLKKPEICKSNPMLQQTICPFPLRRPVMSAVP 266
Query: 326 *IKTAK 343
IKT K
Sbjct: 267 TIKTRK 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,410,755
Number of Sequences: 37544
Number of extensions: 260560
Number of successful extensions: 654
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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