Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10491
(496 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 4e-34
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 1.6
SB_27336| Best HMM Match : zf-U1 (HMM E-Value=2) 29 1.6
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 29 2.1
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2) 28 4.9
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8) 27 6.4
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07) 27 6.4
SB_40403| Best HMM Match : Vicilin_N (HMM E-Value=0.012) 27 8.5
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 27 8.5
>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 140 bits (340), Expect = 4e-34
Identities = 62/86 (72%), Positives = 80/86 (93%)
Frame = +2
Query: 5 NKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYK 184
N +V+SSRRK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RGH+K
Sbjct: 4 NSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRGHFK 63
Query: 185 GQQVGKVMQVYRKKFVVYIERIQKKR 262
QQVGKV+QVYRKK+V++I+RIQ+++
Sbjct: 64 SQQVGKVIQVYRKKWVIHIDRIQREK 89
Score = 65.7 bits (153), Expect = 2e-11
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = +1
Query: 253 KEKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGK 390
+EKANGAT VGIHPSK IVKLK++KDRK ILDR+ + +LA GK
Sbjct: 87 REKANGATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSKLAEKGK 132
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 267 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 431
W N IC ++C C+V DE N + ++ G TW R +R + G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577
>SB_27336| Best HMM Match : zf-U1 (HMM E-Value=2)
Length = 206
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/99 (20%), Positives = 45/99 (45%)
Frame = +2
Query: 8 KQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKG 187
K+ S ++ + K+H ++ H+R + L K+ N+K + + K +Q K
Sbjct: 43 KETLSKKKSSLKKHVTSQKHLR---AKATLEKDKANDQNIKKL-LSKHSTIQGSTLPEKM 98
Query: 188 QQVGKVMQVYRKKFVVYIERIQKKRPMVQQHMSAFTLQS 304
+ + K V+Y+ ++ RP ++++ T +S
Sbjct: 99 RLYRYELVEIMLKAVIYLAKVDVLRPFLEKYGHRLTTRS 137
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 441 LRGLHGCGSFLGVFTLVFAKCSQS 370
L GLH CG + VFAKC Q+
Sbjct: 72 LVGLHPCGDLVPTMLKVFAKCDQA 95
>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 5 NKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 148
+ Q+ RK+ K H P HIR+ S + K +R+ N + P IRK
Sbjct: 4 HSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52
>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
Length = 606
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 2 FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 154
F+ S +K+ +R+F +HI + + +S SK+ ++ K + DD
Sbjct: 124 FSTSQASRPKKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDD 174
>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +2
Query: 62 SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQ--VVRGHYKGQQVGKVMQVYRK 223
+ ++++ + + K LR+ K+MP R+D+++Q V YK ++VG+ + R+
Sbjct: 139 NEVKQLGNGNNMEKILREFIKKKNMPKREDEKLQGNVSGRDYKNKKVGQKSEEQRE 194
>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
Length = 586
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 55 CSFTYKASVDVLSPV*GTKTKIQCKIHAYSQR 150
CS K ++ L+ + GT KI+ K HA+S++
Sbjct: 72 CSCKTKTELNALNELLGTDEKIEKKSHAWSEK 103
>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 399 TLVFAKCSQSALCSAIEDCFAVFI 328
T+ + C + + CS I DCF VFI
Sbjct: 221 TMPLSFCQKFSSCSVIIDCFEVFI 244
>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
Length = 1188
Score = 27.5 bits (58), Expect = 6.4
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 329 FIFN-LTITHFEG*MPTYAVAPLAFSFESSQCIQQTFYDTPASLCQPVGLCSVHV 168
F FN L HF + T V + S C+Q+ Y P L PV L V +
Sbjct: 247 FTFNHLAFPHFLAQIFTSVVGYILGWLACSMCLQKIAYALPLILATPVSLALVFI 301
>SB_40403| Best HMM Match : Vicilin_N (HMM E-Value=0.012)
Length = 1119
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 128 KSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQKKRPMVQ 274
K MP RKD V+ H GQ+ ++ + ++ + IE +++K +Q
Sbjct: 854 KDMPQRKDSRSSSVKDHVDGQR-AELEDMSEERILREIEELRQKELEIQ 901
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 358 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWP 260
C G + + ST + L+G+ CR M+L HWP
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWP 358
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,679,148
Number of Sequences: 59808
Number of extensions: 321383
Number of successful extensions: 930
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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