Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10489
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000513075 Cluster: PREDICTED: similar to CG17218-PA...    43   0.006
UniRef50_O42651 Cluster: Autophagy-related protein 17; n=1; Schi...    34   2.9  

>UniRef50_UPI0000513075 Cluster: PREDICTED: similar to CG17218-PA,
           isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar
           to CG17218-PA, isoform A - Apis mellifera
          Length = 152

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 540 VKDSEPVNCWACSSNVNPLCNDPFNIRIDTGNSYLFRLENCD 665
           ++    + CW C+SN NPLC DP N+   T +  +F ++ C+
Sbjct: 18  IQSGSALQCWDCASNTNPLCGDPMNV---TDHHGIFHVKTCE 56


>UniRef50_O42651 Cluster: Autophagy-related protein 17; n=1;
           Schizosaccharomyces pombe|Rep: Autophagy-related protein
           17 - Schizosaccharomyces pombe (Fission yeast)
          Length = 481

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 60  VLVLYEFFRKNSNTNSLRITNIFTYMRY*LAATQRFAID*KQ*WQLLGSAHQFNKSQMSA 239
           ++ LY FF    +T  ++   +   M      TQ+      Q  QL G AH+FN+   + 
Sbjct: 46  LIYLYSFFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHKFNEDAKTD 105

Query: 240 LHNQLK 257
           L N +K
Sbjct: 106 LRNSIK 111


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,423,582
Number of Sequences: 1657284
Number of extensions: 11970869
Number of successful extensions: 24373
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24370
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)