Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10489
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    34   0.017
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    28   1.1  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   3.4  
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    26   5.9  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   7.8  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   7.8  

>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 60  VLVLYEFFRKNSNTNSLRITNIFTYMRY*LAATQRFAID*KQ*WQLLGSAHQFNKSQMSA 239
           ++ LY FF    +T  ++   +   M      TQ+      Q  QL G AH+FN+   + 
Sbjct: 46  LIYLYSFFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHKFNEDAKTD 105

Query: 240 LHNQLK 257
           L N +K
Sbjct: 106 LRNSIK 111


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 438 NCSELHIKRSV*CLLPILNLSFVGIENLHFFLHSGS 331
           NC+ +H+KR+    L  +N SF+  E  ++    GS
Sbjct: 308 NCTRVHLKRTSPSELDYINASFIKTETSNYIACQGS 343


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 181 NNNGNY*VQHTNLTSHKCQRYIISLKSHDFTFNSIMCTEVK 303
           NN+ NY V       H+C++++ +LK+  +   ++   ++K
Sbjct: 504 NNDENYLVNQREDLIHQCKKFLHTLKTARYYLETVQLHQLK 544


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 479 KLTRLSENTKAELKIVQNFILKE 411
           +LTR + N KA+ KI  NF++++
Sbjct: 16  RLTRRNANKKAKAKIYGNFVIQQ 38


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 616 ILKGSLHSGFTLDEHAQQFTGSLSFT 539
           ++  SLH+ F  + HA   TG LS T
Sbjct: 897 VVVNSLHNYFFAEAHASSVTGVLSIT 922


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 516 PVLLHALFVKDSEPVNCWACSSNVNPLCN 602
           P L  AL  +    ++C  C  +++PLCN
Sbjct: 207 PKLTKALAAQHLHLLSCQKCPLSIHPLCN 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,493
Number of Sequences: 5004
Number of extensions: 54126
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)