Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10489
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)                    33   0.29 
SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)                 30   1.5  
SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)                     30   2.0  
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      29   2.7  
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   3.6  
SB_38798| Best HMM Match : UPF0004 (HMM E-Value=2.8)                   28   6.2  
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)               28   6.2  

>SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)
          Length = 519

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 185 LFLINCKSLCSCQSISH-VGKNVCDPKRVRV*VFP 84
           +F I C S CSC+ +SH V   +C P RV V VFP
Sbjct: 274 VFPIVCSS-CSCRCVSHHVLMPMCSPLRVHVDVFP 307



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 158 CSCQSISH-VGKNVCDPKRVRV*VFP 84
           CSC+ + H V  ++C P R +V VFP
Sbjct: 130 CSCRCVPHHVFMSMCPPSRAQVDVFP 155


>SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 158 CSCQSISH-VGKNVCDPKRVRV*VFP 84
           CSC+ + H V  ++C P RV V VFP
Sbjct: 186 CSCRCVPHYVSMSMCSPSRVHVDVFP 211


>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
          Length = 186

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 158 CSCQSISH-VGKNVCDPKRVRV*VFP 84
           CSC+ +SH V  ++C P R  V VFP
Sbjct: 74  CSCRCVSHHVLMSMCSPSRAHVDVFP 99



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 158 CSCQSISH-VGKNVCDPKRVRV*VFP 84
           CSC+ + H V  ++C P R  V VFP
Sbjct: 46  CSCRCVPHHVLMSMCSPSRAHVDVFP 71


>SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)
          Length = 334

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 158 CSCQSISH-VGKNVCDPKRVRV*VFP 84
           CSC+ +SH V   +C P RV V VFP
Sbjct: 2   CSCRCVSHHVLMPMCSPLRVHVDVFP 27


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 158 CSCQSISH-VGKNVCDPKRVRV*VFP 84
           CSC+ + H V K++C P R  V VFP
Sbjct: 563 CSCRCVHHHVLKSMCFPSRAHVDVFP 588


>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 879

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 158 CSCQSISH-VGKNVCDPKRVRV*VFP 84
           CSC+ +SH V   +C P R  V VFP
Sbjct: 102 CSCRCVSHHVLMPMCSPSRAHVDVFP 127


>SB_38798| Best HMM Match : UPF0004 (HMM E-Value=2.8)
          Length = 169

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 498 KTIVLVPVLLHALFVKDSEPVNCWACSSNVNPLCNDPFNIRI 623
           K   LVPVL   +     +P    A + N NP   DPF++ I
Sbjct: 4   KAFELVPVLEKIISNSSDKPKTVTAIAKNDNPKNFDPFSVEI 45


>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
          Length = 540

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 158 CSCQSISH-VGKNVCDPKRVRV*VFP 84
           CSC+ + H V  ++C P R  V VFP
Sbjct: 177 CSCRCVPHHVLMSMCSPSRAHVDVFP 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,494,431
Number of Sequences: 59808
Number of extensions: 403804
Number of successful extensions: 820
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)