Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10487
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   109   5e-25
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   107   2e-24
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    30   0.36 
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    29   0.48 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   1.9  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   4.5  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   5.9  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    26   5.9  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   5.9  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   7.8  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   7.8  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    25   7.8  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   7.8  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  109 bits (261), Expect = 5e-25
 Identities = 55/106 (51%), Positives = 70/106 (66%), Gaps = 4/106 (3%)
 Frame = +1

Query: 4   MSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 183
           MSKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP
Sbjct: 1   MSKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRP 60

Query: 184 KMQVCVLGDQQHCDEAKTLNVPCM----MLRL*KN*IRTKSLSRNW 309
            M +C+LGD    D AK   V  M    + +L KN    K L++ +
Sbjct: 61  NMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKY 106



 Score = 89.4 bits (212), Expect = 4e-19
 Identities = 43/58 (74%), Positives = 48/58 (82%)
 Frame = +3

Query: 336 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 509
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVG
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVG 169



 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 32/47 (68%), Positives = 38/47 (80%)
 Frame = +2

Query: 509 HVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
           HVDM  ++LA N+ L+INFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 170 HVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  107 bits (256), Expect = 2e-24
 Identities = 55/106 (51%), Positives = 71/106 (66%), Gaps = 4/106 (3%)
 Frame = +1

Query: 4   MSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 183
           MSKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP
Sbjct: 1   MSKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRP 60

Query: 184 KMQVCVLGDQQHCDEAKTLNVPCM----MLRL*KN*IRTKSLSRNW 309
            M +C+LGD    D AK   V  M    + +L KN    K L++ +
Sbjct: 61  NMAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKY 106



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 43/58 (74%), Positives = 48/58 (82%)
 Frame = +3

Query: 336 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 509
           SE LIKQIPRLLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVG
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVG 169



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 29/47 (61%), Positives = 38/47 (80%)
 Frame = +2

Query: 509 HVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
           HV+M+ ++L  N+ L++NFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 170 HVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 502 QLACGHDS**ACSECASFHQLPCVTAQETLAEC 600
           QL   H S  + S   ++HQL CV  Q+ L+EC
Sbjct: 47  QLCLSHPSINSLSSFQTYHQLLCVLEQKHLSEC 79


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -3

Query: 571 HKEVDGKMHILSKLIRSHVHMPTATERHNTFFIWNLMVPLTSSIFCV 431
           ++++D    +L   +   VH+   + R NT F + L + ++  IFC+
Sbjct: 228 NEQLDSNFTLLDAYLEPLVHLHEYSRRSNTLFFFYLPIVMSILIFCL 274


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 37   CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 153
            C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 939  CDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = -3

Query: 229 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 50
           P H  A LQE   A  AA+    L+ ++NA    G +S D  +AL  P    S      +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373

Query: 49  RHSRTRRACH 20
            HS+++ + H
Sbjct: 374 SHSQSQNSLH 383


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 452 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 345
           D   L RH  L   + + F +  Q GT+   NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 524 PDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY*FNTINFMT 676
           P E  +N H+   +  ++L+ HW+ + SL M++     Q    F+ +NFMT
Sbjct: 30  PSEEQRNEHVLKKWENNVLR-HWKILFSLFMQTCGDSVQGNAAFSILNFMT 79


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = +1

Query: 4   MSKVSRDTLYECVNAVLQSSKDKK--RNFLETVELQIGLKN--YDPQKDKRFSGTVKLKY 171
           + + S DT Y  VNA     +DKK  RN   TV  + G +     P ++       K+ Y
Sbjct: 709 LEEFSPDTSYSLVNAFAYCDRDKKNVRNCSFTVIFRDGSEETLCAPTEESMIEWVAKINY 768

Query: 172 I 174
           I
Sbjct: 769 I 769


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 279 SIFSKPQHHTWHIQGFSLVTMLL 211
           ++F+KPQ+H+  ++ +  VT LL
Sbjct: 7   TVFTKPQNHSSTLEFYDFVTTLL 29


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 470 PNEEGVVSFCSSWHVDMTPDE-LAQNVHLSI-NFLVSLLKKHWQNVRSLHMKS 622
           P+++G+ +        +T D+ L +N  L+  +F V LLK +W  +   H ++
Sbjct: 171 PHDKGIAACIEKNLTPITWDKNLVENHKLADRDFAVGLLKNYWSQLHEFHSEN 223


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 380 FEQSW*I-PWSSLPPGVHDAED**SQGNH*VPNEEGVV 490
           F + W I P+ SLP G H +E          PN+EG V
Sbjct: 36  FPKEWSILPFLSLPDGAHSSEKDFVYFTLPFPNDEGTV 73


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 40  VNAVLQSSKDKKRNFLETV 96
           +NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,282
Number of Sequences: 5004
Number of extensions: 61169
Number of successful extensions: 178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)