Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10487
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 117 8e-27
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 116 2e-26
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 115 4e-26
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 113 2e-25
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 36 0.040
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 36 0.040
05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722... 33 0.16
04_04_0401 - 24946801-24947562 33 0.16
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907... 31 0.86
09_06_0364 + 22554082-22554225,22554306-22554520,22554671-225547... 29 2.6
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628... 29 4.6
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 29 4.6
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 28 8.0
01_06_0794 + 32050413-32050523,32050663-32051391 28 8.0
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 117 bits (282), Expect = 8e-27
Identities = 54/104 (51%), Positives = 74/104 (71%)
Frame = +1
Query: 4 MSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 183
MSK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 184 KMQVCVLGDQQHCDEAKTLNVPCMMLRL*KN*IRTKSLSRNWPK 315
KM+VC+LGD QH +EA+ + + M + K + K L + K
Sbjct: 61 KMKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAK 104
Score = 75.8 bits (178), Expect = 3e-14
Identities = 42/80 (52%), Positives = 52/80 (65%), Gaps = 22/80 (27%)
Frame = +3
Query: 336 SESLIKQIPRLLGPGLNKAGK----------------------FPGLLSHQESMTQKIDE 449
SE++IKQIPRLLGPGLNKAGK FP L++HQES+ K++E
Sbjct: 112 SEAIIKQIPRLLGPGLNKAGKILLVYGRSILKSSYIIVSKRGKFPTLVTHQESLESKVNE 171
Query: 450 VKGTIKFQMKKVLCLSVAVG 509
K T+KFQ+KKVLC+ VAVG
Sbjct: 172 TKATVKFQLKKVLCMGVAVG 191
Score = 59.3 bits (137), Expect = 3e-09
Identities = 26/44 (59%), Positives = 35/44 (79%)
Frame = +2
Query: 518 MTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMG R++
Sbjct: 195 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVIRVF 238
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 116 bits (279), Expect = 2e-26
Identities = 53/104 (50%), Positives = 74/104 (71%)
Frame = +1
Query: 4 MSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 183
MSK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 184 KMQVCVLGDQQHCDEAKTLNVPCMMLRL*KN*IRTKSLSRNWPK 315
K++VC+LGD QH +EA+ + + M + K + K L + K
Sbjct: 61 KLKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAK 104
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/58 (63%), Positives = 47/58 (81%)
Frame = +3
Query: 336 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 509
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG
Sbjct: 112 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVG 164
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/44 (59%), Positives = 35/44 (79%)
Frame = +2
Query: 518 MTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMG R++
Sbjct: 168 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVYRVF 211
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 115 bits (276), Expect = 4e-26
Identities = 55/104 (52%), Positives = 72/104 (69%)
Frame = +1
Query: 4 MSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 183
MSK+ + L E ++ V+ K+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 184 KMQVCVLGDQQHCDEAKTLNVPCMMLRL*KN*IRTKSLSRNWPK 315
KM+VC+LGD QH +EA+ + + M + K + K L + K
Sbjct: 61 KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAK 104
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/58 (63%), Positives = 47/58 (81%)
Frame = +3
Query: 336 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 509
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG
Sbjct: 112 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVG 164
Score = 64.1 bits (149), Expect = 1e-10
Identities = 26/47 (55%), Positives = 38/47 (80%)
Frame = +2
Query: 509 HVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
++ M ++ QN+ +S+NFLVSLLKK+WQNVR L++KSTMG P R++
Sbjct: 165 NLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPYRVF 211
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 113 bits (271), Expect = 2e-25
Identities = 54/105 (51%), Positives = 73/105 (69%)
Frame = +1
Query: 1 KMSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPR 180
++ K+ + L E ++ V+ SK+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPR
Sbjct: 18 QLHKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPR 77
Query: 181 PKMQVCVLGDQQHCDEAKTLNVPCMMLRL*KN*IRTKSLSRNWPK 315
PKM+VC+LGD QH +EA+ + + M + K + K L + K
Sbjct: 78 PKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAK 122
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/58 (63%), Positives = 47/58 (81%)
Frame = +3
Query: 336 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 509
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG
Sbjct: 130 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVG 182
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/47 (55%), Positives = 38/47 (80%)
Frame = +2
Query: 509 HVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
++ M ++ QN+ +S+NFLVSLLKK+WQNVR L++KSTMG P R++
Sbjct: 183 NLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 229
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 35.5 bits (78), Expect = 0.040
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 58 SSKDKKRNFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAK 234
S+ +KKRNF ETVE + L DP++ D+ G + L + ++V V + DEA+
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEAR 337
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 35.5 bits (78), Expect = 0.040
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 482 GVVSFCSSWHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKS 622
G S +DM ++ +NV ++ V + K W NVRSLH+K+
Sbjct: 193 GTCSGIKVGRLDMKEEDTVENVMAAVEAAVENVPKKWANVRSLHLKA 239
>05_03_0678 -
16871481-16871620,16871836-16871881,16872170-16872243,
16872495-16872552,16872640-16872702,16872891-16873012,
16873132-16873247,16873367-16873428,16873497-16873589,
16874061-16874138,16874248-16874423,16874500-16874550,
16874964-16875078
Length = 397
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 25 TLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC 198
T +E + + LQS K K R +E + D + K + +K + PK +VC
Sbjct: 256 TRWEQLKSTLQSGKHKGLRRCIEEIVFSYTYPRLDMEVSKHMNHLLKAPFCIHPKTGRVC 315
Query: 199 VLGDQQHCDEAKTLNVPCM 255
V D +CD+ VP +
Sbjct: 316 VPIDPNNCDDFDPTTVPTL 334
>04_04_0401 - 24946801-24947562
Length = 253
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 509 HVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
H M +E +NV ++ + + + W+NVR+LH+K+ LY
Sbjct: 159 HAAMAREEAVENVVAAVEAAAACVPRKWRNVRALHVKAPESVALPLY 205
>02_05_1241 -
35189111-35189389,35189604-35189711,35189982-35190713,
35190811-35191230,35191484-35191565,35191719-35192002,
35193104-35193256
Length = 685
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 500 SSWHVDMTPDELAQNVHLSINFLVSLLKKH 589
+SW + + + VHLS+NF++ L+KKH
Sbjct: 292 TSWE-EQKQSVIVEGVHLSLNFVMGLMKKH 320
>09_06_0364 +
22554082-22554225,22554306-22554520,22554671-22554752,
22554976-22555371,22555553-22556293,22556420-22556551,
22556981-22557367
Length = 698
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 500 SSWHVDMTPDELAQNVHLSINFLVSLLKKH 589
++W D + + VHLS+NF++ L++KH
Sbjct: 258 TAWE-DRKESVVVEGVHLSLNFVMGLMRKH 286
>09_02_0251 -
6282420-6282526,6282642-6283104,6283223-6283289,
6283536-6283808,6284096-6284907,6285402-6285479,
6285586-6285636,6285737-6285817,6285903-6285982,
6288481-6288652
Length = 727
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 483 PSSFGT*WFP*LHQSSASWTPGGREDQGIYQLCSNR 376
P F WFP +H ++ S R Q I+ +C N+
Sbjct: 493 PVYFKNDWFPFIHSTTLSEGTNARRRQDIFGVCCNK 528
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 157 QCRRNACPSVGHSSSDQFEALQSPKS 80
Q RN PS+ H +SD F + SP S
Sbjct: 81 QKSRNLSPSISHQASDSFSPVPSPLS 106
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 190 AFSAAVCILALQCRRNACPSVGH 122
A A VCI L+CR+ CP H
Sbjct: 110 ASRAEVCIFCLRCRQVLCPRCSH 132
>01_06_0794 + 32050413-32050523,32050663-32051391
Length = 279
Score = 27.9 bits (59), Expect = 8.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2
Query: 545 HSEQAHQESCPHANCY 498
H +H++ CPHA C+
Sbjct: 98 HDSDSHEDGCPHAPCF 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,831,214
Number of Sequences: 37544
Number of extensions: 397130
Number of successful extensions: 1093
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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