Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10487
(690 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4) 83 2e-16
SB_42576| Best HMM Match : VlpA_repeat (HMM E-Value=8.1) 30 1.5
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21) 29 3.6
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07) 28 6.2
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 28 8.2
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)
Length = 81
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/50 (72%), Positives = 45/50 (90%)
Frame = +3
Query: 336 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKV 485
S+SLIKQIPR+LGPGLNKAGKFP ++H E+M QKI++V+ TIKFQMKK+
Sbjct: 28 SDSLIKQIPRILGPGLNKAGKFPTPINHNENMVQKIEDVRSTIKFQMKKI 77
>SB_42576| Best HMM Match : VlpA_repeat (HMM E-Value=8.1)
Length = 325
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 354 QIPRLLGPGLNKAGKFPGLLS--HQESMTQKIDEVKGTIKFQMKKV 485
+IP P +K K+PG ++ HQ + E GTI MK +
Sbjct: 30 EIPGYYQPCTSKTSKYPGTMNLVHQRHRNTRTSEYPGTINLVMKDI 75
>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 578 AVTQGS*WKDAHSEQAHQESCPH 510
AV+ WK H+ Q QESCPH
Sbjct: 103 AVSNPCFWKWIHAHQTAQESCPH 125
>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1161
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -1
Query: 249 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 70
W I LV L+ + N + R ++VF + E L+ +W + +T L +Q F+
Sbjct: 296 WFIWTAVLVDALIQANNGSWRRRAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 355
Query: 69 V 67
+
Sbjct: 356 L 356
>SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)
Length = 342
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = -1
Query: 285 SYSIFSKPQHHTWHIQGFSLVTMLLVSKNA----NLHFRPRYVF*LYSAGETLVLLWVIV 118
S S++ + TW + S +T+ +S LH R + +F + A L+++W+I
Sbjct: 96 SCSLYMSFELSTWLLLMSSFLTLTAISCERFAALTLHLRYQQMFTMKRAAMALIMIWLIS 155
Query: 117 LQTN-LKLYSLQKVTFLV 67
L N ++L L+ + + +
Sbjct: 156 LSLNVIRLLLLESLFWCI 173
>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
Length = 1286
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 555 PSTSLCHCSRNTGRMSD 605
PS CHC N GRM D
Sbjct: 526 PSDPTCHCPSNNGRMKD 542
>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 1243
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +1
Query: 100 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 222
LQ G K YDP K+K K KY+ PK+ + C ++ +QHC
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376
>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1867
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -1
Query: 249 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 70
W I LV L+ + N + + ++VF + E L+ +W + +T L +Q F+
Sbjct: 395 WFIWFAVLVDALIQANNGSWRRQAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 454
Query: 69 VLRG 58
+ G
Sbjct: 455 LAVG 458
>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 353 ADSPFVGSRFEQSW*IPWSSLPPGVHDAED 442
+DSP+ G+ + W I S+ P VHD D
Sbjct: 725 SDSPYSGNSSGEDWDIYSSAQPTAVHDLPD 754
>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1402
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +1
Query: 100 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 222
LQ G K YDP K+K K KY+ PK+ + C ++ +QHC
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,005,111
Number of Sequences: 59808
Number of extensions: 459353
Number of successful extensions: 1065
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -