Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10487
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 121 6e-28
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 99 3e-21
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 99 3e-21
Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical pr... 31 1.0
AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical ... 29 3.1
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 27 9.6
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 121 bits (291), Expect = 6e-28
Identities = 54/84 (64%), Positives = 67/84 (79%)
Frame = +1
Query: 4 MSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 183
MSKVSR++L E + VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 1 MSKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRP 60
Query: 184 KMQVCVLGDQQHCDEAKTLNVPCM 255
M+VCV GDQ H DEA ++P M
Sbjct: 61 NMKVCVFGDQHHLDEAAAGDIPSM 84
Score = 98.7 bits (235), Expect = 3e-21
Identities = 44/58 (75%), Positives = 52/58 (89%)
Frame = +3
Query: 336 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 509
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVG
Sbjct: 112 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVG 169
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/47 (72%), Positives = 41/47 (87%)
Frame = +2
Query: 509 HVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
HV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 170 HVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 98.7 bits (235), Expect = 3e-21
Identities = 44/58 (75%), Positives = 52/58 (89%)
Frame = +3
Query: 336 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 509
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVG
Sbjct: 82 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVG 139
Score = 78.6 bits (185), Expect = 4e-15
Identities = 32/47 (68%), Positives = 39/47 (82%)
Frame = +1
Query: 115 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCM 255
KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA ++P M
Sbjct: 8 KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSM 54
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/47 (72%), Positives = 41/47 (87%)
Frame = +2
Query: 509 HVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
HV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 140 HVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 186
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 98.7 bits (235), Expect = 3e-21
Identities = 44/58 (75%), Positives = 52/58 (89%)
Frame = +3
Query: 336 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 509
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVG
Sbjct: 51 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVG 108
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/47 (72%), Positives = 41/47 (87%)
Frame = +2
Query: 509 HVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
HV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 109 HVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 155
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 187 MQVCVLGDQQHCDEAKTLNVPCM 255
M+VCV GDQ H DEA ++P M
Sbjct: 1 MKVCVFGDQHHLDEAAAGDIPSM 23
>Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical
protein R10E8.3 protein.
Length = 522
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 500 YRKTQHLLHLELNGS--LDFINLLRHGLLVGEKTREFTSFVQTGTQQTGN 357
+R + HLEL GS L+FI LL L +K R+ T F G GN
Sbjct: 348 FRNKISMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIFATVGDVNNGN 395
>AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical
protein E02H9.4 protein.
Length = 118
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 64 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 174
K +K N E VEL +KNY P+ + R V+ KY+
Sbjct: 41 KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 348 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 467
I +IP G GLN A ++ L ++M +K+++ +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,245
Number of Sequences: 27780
Number of extensions: 358741
Number of successful extensions: 909
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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