Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10487
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 117 8e-27
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 117 8e-27
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 114 5e-26
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 111 6e-25
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 36 0.025
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 33 0.14
At5g41880.1 68418.m05099 DNA primase small subunit family contai... 32 0.31
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.72
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 31 0.95
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 1.7
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 1.7
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 2.2
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 2.2
At5g14210.1 68418.m01660 leucine-rich repeat transmembrane prote... 29 3.8
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 3.8
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 117 bits (281), Expect = 8e-27
Identities = 54/105 (51%), Positives = 75/105 (71%)
Frame = +1
Query: 4 MSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 183
MSK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 184 KMQVCVLGDQQHCDEAKTLNVPCMMLRL*KN*IRTKSLSRNWPKN 318
KM++C+LGD QH +EA+ + + M + K + K L + K+
Sbjct: 61 KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKS 105
Score = 98.7 bits (235), Expect = 3e-21
Identities = 44/58 (75%), Positives = 52/58 (89%)
Frame = +3
Query: 336 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 509
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVG 169
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/47 (63%), Positives = 40/47 (85%)
Frame = +2
Query: 509 HVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
++ M +L QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 170 NLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 117 bits (281), Expect = 8e-27
Identities = 54/105 (51%), Positives = 75/105 (71%)
Frame = +1
Query: 4 MSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 183
MSK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 184 KMQVCVLGDQQHCDEAKTLNVPCMMLRL*KN*IRTKSLSRNWPKN 318
KM++C+LGD QH +EA+ + + M + K + K L + K+
Sbjct: 61 KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKS 105
Score = 98.7 bits (235), Expect = 3e-21
Identities = 44/58 (75%), Positives = 52/58 (89%)
Frame = +3
Query: 336 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 509
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVG 169
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/47 (63%), Positives = 40/47 (85%)
Frame = +2
Query: 509 HVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
++ M +L QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 170 NLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 114 bits (275), Expect = 5e-26
Identities = 53/104 (50%), Positives = 73/104 (70%)
Frame = +1
Query: 4 MSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 183
MSK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 184 KMQVCVLGDQQHCDEAKTLNVPCMMLRL*KN*IRTKSLSRNWPK 315
KM++C+LGD QH +EA+ + + M + K + K L + K
Sbjct: 61 KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAK 104
Score = 99.1 bits (236), Expect = 2e-21
Identities = 44/58 (75%), Positives = 52/58 (89%)
Frame = +3
Query: 336 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 509
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVG 169
Score = 70.5 bits (165), Expect = 1e-12
Identities = 29/47 (61%), Positives = 40/47 (85%)
Frame = +2
Query: 509 HVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
++ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 170 NLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 111 bits (266), Expect = 6e-25
Identities = 51/105 (48%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Frame = +1
Query: 4 MSKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPR 180
MSK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PR
Sbjct: 1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60
Query: 181 PKMQVCVLGDQQHCDEAKTLNVPCMMLRL*KN*IRTKSLSRNWPK 315
PKM++C+LGD QH +EA+ + + M + K + K L + K
Sbjct: 61 PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAK 105
Score = 99.1 bits (236), Expect = 2e-21
Identities = 44/58 (75%), Positives = 52/58 (89%)
Frame = +3
Query: 336 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVG 509
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG
Sbjct: 113 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVG 170
Score = 68.1 bits (159), Expect = 5e-12
Identities = 28/47 (59%), Positives = 39/47 (82%)
Frame = +2
Query: 509 HVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 649
++ M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGPP R++
Sbjct: 171 NLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 35.9 bits (79), Expect = 0.025
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 512 VDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 619
+ M D++ +NV ++N +V +L W+ +RSLH+K
Sbjct: 194 LSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLK 229
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 482 GVVSFCSSWHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 619
G S + M E+ +NV ++N LV L W VRSLH+K
Sbjct: 204 GTCSVIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHLK 249
>At5g41880.1 68418.m05099 DNA primase small subunit family contains
Pfam profile: PF01896 DNA primase small subunit
Length = 407
Score = 32.3 bits (70), Expect = 0.31
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +1
Query: 31 YECVNAVLQSSKDKK---RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC 198
+E + LQS ++K R +E + D + K+ + +K + PK +VC
Sbjct: 290 WEQLKKALQSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHLLKAPFCVHPKTGRVC 349
Query: 199 VLGDQQHCDEAKTLNVPCM 255
V D +CDE L VP +
Sbjct: 350 VPIDPNNCDEFDPLAVPTL 368
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 85 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 198
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 30.7 bits (66), Expect = 0.95
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 482 GVVSFCSSWHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 619
G S + M +E+A+NV ++N + L+ W+NV+ H+K
Sbjct: 195 GTCSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 533 LAQNVHLSINFLVSLLKKH 589
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 7 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 144
SKV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 233 SKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 533 LAQNVHLSINFLVSLLKKH 589
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 533 LAQNVHLSINFLVSLLKKH 589
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At5g14210.1 68418.m01660 leucine-rich repeat transmembrane protein
kinase, putative
Length = 812
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 571 HKEVDGKMHILSKLIRSHVHMPTATERH 488
H E+ GK+ LSKL SH+HM E H
Sbjct: 222 HNEISGKLPDLSKL--SHLHMLDLRENH 247
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 185 FGRGMYFSFTVPEKRLSFC 129
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,398,319
Number of Sequences: 28952
Number of extensions: 329294
Number of successful extensions: 840
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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