Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10486
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   2.9  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   6.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.7  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    25   8.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.9  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   8.9  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    25   8.9  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 570 GKVTYNGSEKPDVTFTISDEEWPILYP 490
           G V+   +E PD+ F+ +D  WP  YP
Sbjct: 211 GTVSKTANEGPDIYFSNADLIWPNEYP 237


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 150 LPIYYTFKFEREYFVIYLFFSYIKNKNTYHLTEYVNHEYKM 272
           +PIY T K E   + I LFF     +  + LT++   ++++
Sbjct: 342 IPIYRTSKHEFYDYNIILFFQNSAREYMFSLTDFFYSDFEL 382


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 698 LKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSS 588
           + R  KPT TT S   A +T   + T  T+P    SS
Sbjct: 345 ISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSS 381


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 351 SRSADLSWSRTSHEIVIRKGY 289
           S+  +++WS+TS+EIV   G+
Sbjct: 336 SQVCNMAWSKTSNEIVTTHGF 356


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = -2

Query: 719 SSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKN 540
           +S +  S+  P   T +T +  S   T S S T  T+   TG+S         PT+    
Sbjct: 254 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSST 313

Query: 539 PT*PSRSATKS 507
            T P  ++T S
Sbjct: 314 STPPPPASTSS 324


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/61 (21%), Positives = 27/61 (44%)
 Frame = +3

Query: 117 IKTNTYGNEFSLPIYYTFKFEREYFVIYLFFSYIKNKNTYHLTEYVNHEYKMPST*FRNL 296
           ++T+TYG    L +    +          FF +++++ +    +Y+N  Y+       NL
Sbjct: 617 LETDTYGKVLDLMLKVKDQTNLVNSAALEFFEFLRSEGSEDTLDYLNKNYRPQLESLNNL 676

Query: 297 S 299
           S
Sbjct: 677 S 677


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -2

Query: 614 TAPRVTGSSMRKKAKGKSPTTALKNPT*PSRSATKSGRSYIRETEPSEGVLPRKDQDPGQ 435
           TAP + G S+  +A  ++ TT        S S T   +SY+     S       D+D  +
Sbjct: 158 TAPSIMGMSIHSRADSRAETTQSDGFESRSGSPTHDIQSYLVNRRSSSS--ESSDEDSAE 215

Query: 434 HG 429
            G
Sbjct: 216 EG 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,489
Number of Sequences: 5004
Number of extensions: 57584
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)