Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10486
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0855 - 32271631-32271712,32271823-32271922,32272012-322720...    40   0.002
01_03_0268 + 14436631-14436756,14436866-14436929,14437001-144371...    39   0.005
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449     29   4.0  
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833...    28   7.1  
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330...    28   7.1  
11_04_0143 + 14034141-14034257,14034349-14034594,14034797-14035711     28   9.3  
03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684           28   9.3  

>02_05_0855 -
           32271631-32271712,32271823-32271922,32272012-32272072,
           32272169-32272294
          Length = 122

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = -3

Query: 493 SGKLNPQKAFFQGKIKIQGNMGLAMKLT 410
           SGKLNPQ AF  GK+KI+G++  A K T
Sbjct: 85  SGKLNPQMAFIMGKLKIKGSISAAQKFT 112


>01_03_0268 +
           14436631-14436756,14436866-14436929,14437001-14437100,
           14437187-14437478
          Length = 193

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = -3

Query: 493 SGKLNPQKAFFQGKIKIQGNMGLAMKLT 410
           SGKLNPQ  F  GK+KI+G++  A K T
Sbjct: 86  SGKLNPQMVFIMGKLKIKGSISAAQKFT 113


>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
          Length = 604

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 596 GSSMRKKAKGKSPTTALKNPT*PSRSATKSGRSYIRETEPSEGVLPRKDQDPGQHG 429
           GS  R++AK   PT  +      +++ATK   S  R+ + S    PR   D  + G
Sbjct: 193 GSKPRRRAKSPMPTRVISEVFKEAKAATKRFSSPQRQRKSSSPHSPRSPDDSPRFG 248


>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
            8332461-8332619,8333246-8333372,8333444-8333775,
            8333859-8334593,8334735-8335073,8335160-8335313,
            8335405-8336154,8336242-8336372
          Length = 1565

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 714  KYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAE 604
            +Y K L E++ +     + KV G+Y    RN  DG E
Sbjct: 1367 EYFKYLTESVSSGSPTCLAKVLGLYQVAARNLRDGKE 1403


>04_03_0068 -
           10631827-10631947,10632037-10632112,10632152-10633021,
           10650975-10651599
          Length = 563

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
 Frame = -1

Query: 750 PSPTTPEGFKVFKYM------KILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAEGYWVI 589
           P   TPE  K F+ M      + L   MQT +  L++K    Y  KV     G       
Sbjct: 37  PEKFTPEQKKEFEAMLQQAQDQFLNSFMQTRKGTLVQK----YKIKVVADDPGTS----- 87

Query: 588 NAKEGKGKVTYNGSEKPDV 532
           ++K+G GK   NGS +P +
Sbjct: 88  SSKDGDGKQAPNGSAQPSI 106


>11_04_0143 + 14034141-14034257,14034349-14034594,14034797-14035711
          Length = 425

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 400 RQAAGRIETIRSKL*TEQVRGSELVAYQPRDSYTERLRN 284
           R+  GR+  + SKL  ++    +  +Y+ RD+Y E LR+
Sbjct: 264 REHGGRVRGVSSKLSWKEGFKQDASSYKRRDAYKESLRD 302


>03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684
          Length = 222

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 648 GIYGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPDVTF 526
           G+ G K+      A   W  +A++G G+  Y GS  PD  F
Sbjct: 103 GLAGLKMARAASTASR-WRASAEQGSGEDDYGGSVVPDAGF 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,353,076
Number of Sequences: 37544
Number of extensions: 373465
Number of successful extensions: 980
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)