Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10486
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42890.1 68418.m05227 sterol carrier protein 2 (SCP-2) family...    36   0.022
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu...    30   1.9  
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu...    29   2.6  
At4g03440.1 68417.m00471 ankyrin repeat family protein contains ...    29   2.6  
At1g67160.1 68414.m07640 F-box family protein similar to F-box p...    29   2.6  
At5g55820.1 68418.m06956 expressed protein                             29   3.4  
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    29   3.4  
At3g09000.1 68416.m01053 proline-rich family protein                   29   3.4  
At1g80240.1 68414.m09390 expressed protein contains Pfam profile...    29   4.5  
At3g23380.1 68416.m02948 p21-rho-binding domain-containing prote...    28   5.9  
At1g62220.1 68414.m07018 expressed protein                             28   5.9  

>At5g42890.1 68418.m05227 sterol carrier protein 2 (SCP-2) family
           protein similar to sterol carrier protein-2 [Homo
           sapiens] GI:432973; contains Pfam profile PF02036: SCP-2
           sterol transfer family
          Length = 123

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = -3

Query: 493 SGKLNPQKAFFQGKIKIQGNMGLAMKLT 410
           +GK+NPQ AF +G +KI+G++  A K T
Sbjct: 86  TGKMNPQMAFIRGAMKIKGSLSAAQKFT 113


>At4g35785.2 68417.m05083 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 141

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/57 (38%), Positives = 27/57 (47%)
 Frame = -2

Query: 752 RRRRQPRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMR 582
           R R + R  LRS +  RSL RP  P+R+    +S     S  E   T   VTG S R
Sbjct: 28  RSRSRSRPRLRSRS--RSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTR 82


>At4g35785.1 68417.m05082 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 140

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/57 (40%), Positives = 28/57 (49%)
 Frame = -2

Query: 752 RRRRQPRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMR 582
           R R + R  LRS +  RSL RP  P+R+   R  + S  S  E   T   VTG S R
Sbjct: 28  RSRSRSRPRLRSRS--RSLPRPVSPSRSR-GRSRSRSRGSEVENPGTTLYVTGLSTR 81


>At4g03440.1 68417.m00471 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 751

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +1

Query: 505 PLFVADREGHVGFFRAVVGDFPFAFFRIDDPVTLGAVWTVSDLETVDPADFLDQVVLVGL 684
           PL VA R+GH+   +A+V    F   R+ +           D E ++P    D+     L
Sbjct: 162 PLHVAARDGHLTVVKALVASVTFCSDRLAE----------EDRERLNPYILKDKNGDTAL 211

Query: 685 HGLFKDLH 708
           H   KDLH
Sbjct: 212 HSALKDLH 219


>At1g67160.1 68414.m07640 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 450

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 405 KSVSFIASPMLPWILIFPWKN 467
           KSV  + +P  PWI++FP KN
Sbjct: 49  KSVIGVTNPTTPWIILFPNKN 69


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = -3

Query: 580  RRQRESHLQRL*KTRR-----DLHDQRRRVADLISGKLNPQKAFFQGKIKIQGNMGLAMK 416
            +RQRE   +RL + ++     D   Q+R   + +  +   ++     +IK Q  +     
Sbjct: 1605 KRQREEEDKRLKEAKKRQRIADFQRQQREADEKLQAEKELKRQAMDARIKAQKELKEDQN 1664

Query: 415  LTDLQRQAAGRIETIRSK 362
              +  RQA  RI  +RSK
Sbjct: 1665 NAEKTRQANSRIPAVRSK 1682


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
 Frame = -2

Query: 749 RRRQPRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAK 570
           R   PR+  RS +  R    P      + S         +  +   +P   GS +R  + 
Sbjct: 147 RSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRSGSP 206

Query: 569 GKSPTTALKNPT*PSRSAT-KSGRSYIRETEPSEGVLPRKDQDP 441
           G+  + +      P RS + +  RSY  E   S+  +PR+ + P
Sbjct: 207 GRVKSHSRS----PRRSVSPRKNRSYTPEQARSQSPVPRQSRSP 246


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 746 RRQPRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRK-KAK 570
           R  PR +  SS   + + RP  PTR   +        S++ +  T+P  T +S+ K  ++
Sbjct: 224 RSNPRPSSASSK--KPVSRPATPTRRPSTPTGPSIVSSKAPSRGTSPSPTVNSLSKAPSR 281

Query: 569 GKSPTTALKN 540
           G SP+  L +
Sbjct: 282 GTSPSPTLNS 291


>At1g80240.1 68414.m09390 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 370

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -1

Query: 735 PEGFKVFKYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAEGYWVINAKEGKGKVTY 556
           PEG +  + +   E A+       + K   +  F V +  DG EG  ++ A  G+GKV  
Sbjct: 251 PEGHRAIELVGGKESAISQIVRTSLNKFYALT-FNVGDARDGCEGPMIVEAFAGQGKVMV 309

Query: 555 NGSEK 541
           + + K
Sbjct: 310 DYASK 314


>At3g23380.1 68416.m02948 p21-rho-binding domain-containing protein
           contains Pfam PF00786: P21-Rho-binding domain
          Length = 193

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = -2

Query: 635 SRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPT*PSRSATKSGRSYIRETEPSEGVLPR 456
           +++ET  T+ +  GSS  K  KG+  T+   N   P+ S ++ G S +R ++ + G    
Sbjct: 63  TKTETKGTSNKKPGSSGEKHRKGRRKTSTGNNS--PTESPSRVGGS-VRPSKRNTGKQRE 119

Query: 455 KDQDPG-QHGAGYE 417
           ++   G + G+G E
Sbjct: 120 QNTGSGSESGSGLE 133


>At1g62220.1 68414.m07018 expressed protein
          Length = 153

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/57 (40%), Positives = 30/57 (52%)
 Frame = -2

Query: 734 RKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGK 564
           RKA  SS +  + K   K   T   RK+A +  +    V +A RV GSS +KK KGK
Sbjct: 95  RKARVSSASASTAKGDAKAAVT---RKAAAARANGK--VASASRVKGSSEKKKGKGK 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925,744
Number of Sequences: 28952
Number of extensions: 303174
Number of successful extensions: 821
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)