Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10485
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 95 3e-20
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 94 7e-20
08_02_0101 + 12374476-12376683 33 0.18
02_05_0105 + 25874155-25874495,25874586-25874615,25875327-258754... 31 0.54
11_01_0570 - 4529901-4529962,4530725-4530800,4531247-4531306,453... 29 1.7
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 28 5.1
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 5.1
10_08_0046 + 14411844-14413154,14413753-14413800,14413879-144139... 28 5.1
11_01_0681 - 5568312-5568328,5569057-5569213,5569321-5569482,556... 27 6.7
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243... 27 6.7
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 27 6.7
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536... 27 8.8
06_03_0493 + 21402536-21404599 27 8.8
02_02_0672 - 12814610-12815703,12815743-12816226 27 8.8
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 95.1 bits (226), Expect = 3e-20
Identities = 39/59 (66%), Positives = 50/59 (84%)
Frame = +3
Query: 255 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 431
EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KDFGEE+ L++++DY+K
Sbjct: 78 EHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESEGLNIVQDYVK 136
Score = 85.0 bits (201), Expect = 3e-17
Identities = 44/90 (48%), Positives = 57/90 (63%)
Frame = +1
Query: 31 DVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 210
+ VE P P+L G MD+ ALQ V+K + H GLV GL EAAKA++K A LCVLAE+
Sbjct: 4 ETPVEAPPAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 211 CDEAAYKKLVQALCKNIRFHWSRLTTTKSL 300
CD+ Y KLV+ALC H + + K+L
Sbjct: 63 CDQPDYVKLVKALCAEHNVHLVTVPSAKTL 92
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 93.9 bits (223), Expect = 7e-20
Identities = 38/59 (64%), Positives = 50/59 (84%)
Frame = +3
Query: 255 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 431
EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KD+GEE+ L++++DY+K
Sbjct: 78 EHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGEESEGLNIVQDYVK 136
Score = 85.4 bits (202), Expect = 2e-17
Identities = 44/90 (48%), Positives = 57/90 (63%)
Frame = +1
Query: 31 DVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 210
+ VE P P+L G MD+ ALQ V+K + H GLV GL EAAKA++K A LCVLAE+
Sbjct: 4 ETPVETPAAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 211 CDEAAYKKLVQALCKNIRFHWSRLTTTKSL 300
CD+ Y KLV+ALC H + + K+L
Sbjct: 63 CDQPDYVKLVKALCAEHNVHLVTVPSAKTL 92
>08_02_0101 + 12374476-12376683
Length = 735
Score = 32.7 bits (71), Expect = 0.18
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 85 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENC--DEAAYKKLVQALCKN 258
V + L+ L+TA + L+HGL A + + + A++C D Y +V LC+
Sbjct: 131 VLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEA 190
Query: 259 IRFHWSRLTTTKSLENG 309
R + + +++ NG
Sbjct: 191 GRTEEAEVLLEEAMSNG 207
>02_05_0105 +
25874155-25874495,25874586-25874615,25875327-25875433,
25875884-25875918,25876310-25876438,25877103-25877294
Length = 277
Score = 31.1 bits (67), Expect = 0.54
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 109 APLAVLHSRPCCYPTRWGWWGPRLQHQP 26
+PLA +RPC +PT W P L+ P
Sbjct: 7 SPLAAAAARPCAFPTPWRCRSPPLRRLP 34
>11_01_0570 -
4529901-4529962,4530725-4530800,4531247-4531306,
4533797-4533959,4534037-4534091,4534314-4534366,
4534881-4534980,4535556-4535703,4535964-4536056
Length = 269
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 102 LQCYIHVHVVTRQDGVGGDLDF 37
++CY H H++T+ +G GGD +
Sbjct: 213 IECYEHNHLITKVEGDGGDSSY 234
>12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 267 PLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 398
PLV K GE A LC+ +K +A+ + ++KDF + T
Sbjct: 1759 PLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDPT 1802
>11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 267 PLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 398
PLV K GE A LC+ +K +A+ + ++KDF + T
Sbjct: 1755 PLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDAT 1798
>10_08_0046 +
14411844-14413154,14413753-14413800,14413879-14413992,
14414218-14414496,14414602-14414715,14415210-14415282,
14415973-14416073
Length = 679
Score = 27.9 bits (59), Expect = 5.1
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Frame = +1
Query: 34 VEVEVPTNPILSGNNMDVNVALQEVLKTA-LIHG--GLVHGLHEAAKALDK-RQAVLCVL 201
V V T I+ G + ++ VL TA HG G++ G + LD R C L
Sbjct: 329 VRVLYLTGRIIRGKRLVDDMLESGVLPTAKFFHGLIGVLCGTEKVDHGLDMFRLMKRCQL 388
Query: 202 AENCDEAAYKKLVQALCKNIRFHWSRLTTTKSLENGLV 315
D Y L++ LC+N RF + + +NG +
Sbjct: 389 V---DTHTYDLLIEKLCRNGRFENGKELWDDAKKNGFM 423
>11_01_0681 -
5568312-5568328,5569057-5569213,5569321-5569482,
5569524-5570546
Length = 452
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/79 (24%), Positives = 29/79 (36%)
Frame = +1
Query: 85 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCKNIR 264
VN Q + + G + G E + +LC A +C + L N
Sbjct: 287 VNYMNQSPVFEGIPSGSFITG-QEVGVVSSGTRCMLCTYAFSCTASTCAFLDHMFTFNFE 345
Query: 265 FHWSRLTTTKSLENGLVSA 321
+W R T L+ L+SA
Sbjct: 346 MYWQRCPTFSKLKTLLISA 364
>08_02_1034 +
23823194-23823307,23823399-23823620,23823984-23824309,
23824648-23824777,23825145-23825441,23825550-23825815,
23827835-23828333,23828902-23828993,23829571-23829735,
23829817-23830204,23830275-23830393,23830494-23830524,
23830675-23830880,23830970-23831014,23831120-23831201,
23832210-23832398,23834499-23834602,23834669-23834759,
23835097-23835225,23835425-23835556,23835779-23835949,
23836143-23836171,23836214-23836301,23836313-23836391,
23836666-23836844
Length = 1390
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 82 DVNVALQEVLKTALIHGGLVHGLHEAAKALD 174
D+ V L + L++ I GLV +H+AA++++
Sbjct: 554 DIRVKLVKALQSEDISTGLVQSIHDAARSIE 584
>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -1
Query: 363 SSRQFS-LPCHPCQSCRD 313
SSR+FS LPC PC S RD
Sbjct: 1207 SSREFSVLPCQPCCSERD 1224
>11_06_0013 -
19252779-19252805,19252947-19253090,19253572-19253663,
19253757-19253835,19253965-19254031,19254163-19254254,
19254986-19255102,19255254-19255365,19255479-19255594,
19255680-19255756,19255912-19255993,19256077-19256214,
19258806-19259009
Length = 448
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 121 LIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCK 255
++ GG HG+HE +D R+ L + + A LV ALC+
Sbjct: 139 ILQGGFFHGIHELTYGVDIRKIRLMGVLQ---RIAIAYLVVALCE 180
>06_03_0493 + 21402536-21404599
Length = 687
Score = 27.1 bits (57), Expect = 8.8
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +1
Query: 91 VALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCKNIRFH 270
V E+L T LIHG ++ E A L + D + Y L+Q LC +
Sbjct: 394 VRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGL---ELDISLYGALIQGLCNVHKLD 450
Query: 271 WSRLTTTKSLENGL 312
++ TK E+GL
Sbjct: 451 EAKSLLTKMDESGL 464
>02_02_0672 - 12814610-12815703,12815743-12816226
Length = 525
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 136 LVHGLHEAAKALDKRQAVLCVLAENC--DEAAYKKLVQALCKNIRFHWSRLTTTKSLENG 309
L+H + K + + + + +N DE Y ++ LC+ +F + KSL +G
Sbjct: 396 LLHWFYYHGKLTEANRLISVMEEKNIAPDEVTYTIIIDGLCRERKFDAATACFLKSLTSG 455
Query: 310 LVSARLT 330
L LT
Sbjct: 456 LSMDVLT 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,522,346
Number of Sequences: 37544
Number of extensions: 265857
Number of successful extensions: 938
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -