Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10484
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0176 - 17575155-17575761,17575935-17575972                       29   2.0  
08_02_0620 + 19387935-19388279                                         29   2.6  
05_07_0241 + 28609700-28611649                                         28   4.5  
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541...    27   6.0  
05_05_0185 + 23064249-23064448,23064881-23064950,23065082-230651...    27   6.0  
10_06_0038 - 9958520-9958763,9959240-9959394                           27   7.9  

>06_03_0176 - 17575155-17575761,17575935-17575972
          Length = 214

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 261 RERDAKRDKSSGGKWCRRAGGRCWWTSRSSLRDRR 157
           R R  +  +  GG+  RR     WW+SR +   RR
Sbjct: 72  RHRRLRLRRGRGGRGARRGPATRWWSSRRATTSRR 106


>08_02_0620 + 19387935-19388279
          Length = 114

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -3

Query: 270 GAGRERDAKRDKSSGGKWCRRAGGR-C---WWTSRSSLRDRRGCW 148
           G G   D +R    GG+W  RAGGR C   W     S     GCW
Sbjct: 48  GGGGGGDVERGDGGGGRW--RAGGRGCERRWCRKPMSGGGGGGCW 90


>05_07_0241 + 28609700-28611649
          Length = 649

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 50  GGQRPASAHYVQ--QHGGAPHRQR 115
           GGQR   AHY++    GGAP R R
Sbjct: 488 GGQRSVCAHYIETAAFGGAPDRLR 511


>08_01_0620 -
           5416197-5416225,5416333-5416652,5417144-5417235,
           5417304-5417394,5417489-5417577,5417812-5417929,
           5418007-5418098,5418180-5418215,5418323-5418403,
           5418510-5418617,5418809-5418901,5419045-5419146,
           5419345-5419449,5419526-5419612,5419952-5420227
          Length = 572

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -3

Query: 318 GYKRGFRNGVRS*DRLGA---GR--ERDAKRDKSSGGKWCRRAGGRCWWTSRSS 172
           G + G R G RS DR G    GR   RD  R    GG+   R GGR  + SR S
Sbjct: 504 GGRSGDRFGGRSGDRFGGRSGGRFGGRDGGRRGGRGGRDGGRRGGRGGFQSRQS 557


>05_05_0185 +
           23064249-23064448,23064881-23064950,23065082-23065120,
           23065639-23066067,23067322-23067627
          Length = 347

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -3

Query: 279 DRLGAGRERDAKRDKSSGGKWCRRAGGRC---WWTSRSSLRDRR 157
           D   AG+++   RD       CR A GRC   W  +R+    RR
Sbjct: 125 DEGAAGKKQGMARDSDEVSPGCRGADGRCSRRWKEARNRALSRR 168


>10_06_0038 - 9958520-9958763,9959240-9959394
          Length = 132

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 279 DRLGAGRERDAKRDKSSGGKWCRRAGGRCWWTSRSS 172
           D LG G  R A R     G     +GG CWW S S+
Sbjct: 72  DVLGRGVSRHATRFPRWLGGAMVLSGGVCWWWSMSA 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,121,986
Number of Sequences: 37544
Number of extensions: 127272
Number of successful extensions: 435
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)