Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10483
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    28   1.1  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    28   1.5  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   2.0  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   2.6  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.5  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   6.1  
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|...    26   6.1  

>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 300 QNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVY 410
           Q+V+FL + +  +  V YE ++ L AK   +   NVY
Sbjct: 65  QSVQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVY 101


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 219 SEHRHLQVPRPQYGLAGANDEEAFEIDQNVEFLHDIR-AKAAAVYYEADEELKAKKHEDF 395
           S H   + P P    +  N   +  + Q+ +  HD+R A +AA+    D ++KA  +   
Sbjct: 426 SPHFTKRSPAPYLSKSFRNSALSLLLSQDEKLQHDVRSASSAALNLPRDTDIKATPNLSQ 485

Query: 396 SKNVYPD 416
           S N+  D
Sbjct: 486 SGNINSD 492


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 180 TERSLWLEVRPVSGEHAVVFEVLASVGEQHTAALPESLASEVM 52
           T R L    R ++   +V  EV ASV EQ T +LP    S  M
Sbjct: 774 TSRELASSDRNINTGTSVASEVSASVSEQSTVSLPREKMSVFM 816


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 119 SKTTACSPLTGLTSSQRLRSVRCQY**STASSTLRAPPSAGTS 247
           SKT++ + L GL    R  S+          STL APP+A TS
Sbjct: 617 SKTSSSTRLNGLGYHSRNTSIASDIDGVPKKSTLGAPPAAHTS 659


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 595 CQDGLQDFLESRILHFQIRYLKHGLQVVKMLVNTKSPHVSFPAA 464
           C D +QD L++     + + L + LQ  K  +N K PH  +P A
Sbjct: 148 CYDSVQDQLDANDYEAKNQVLGYWLQKSKEQLNAKVPH-HYPKA 190


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 375 AKKHE-DFSKNVYPDMLKKLNSIVEANKGH 461
           AK  E DF +   PD + KLN +  +N+ H
Sbjct: 400 AKSQEFDFFEAKIPDSIAKLNELTASNENH 429


>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 532 KHGLQVVKMLVNTKSPHVSFPA 467
           KH L ++K L N+K+PH  F A
Sbjct: 117 KHHLAMLKKLRNSKTPHKVFTA 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,436
Number of Sequences: 5004
Number of extensions: 49047
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)