Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10481
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604           29   2.7  
03_02_0090 - 5564326-5567280                                           28   4.8  

>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
          Length = 259

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +3

Query: 30  DNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAILN 209
           D ++L E  +    +     V+       + NAAK   Y E K   K ++C F K     
Sbjct: 47  DKINLEEMLRHAEPEVPMGSVRGLNNFEALQNAAKEVMYDESKGCNKKIVCEFGKVTKKP 106

Query: 210 SDGT 221
           S GT
Sbjct: 107 SKGT 110


>03_02_0090 - 5564326-5567280
          Length = 984

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 342 DLEGFIGCVLPGLILALF*YALGFRFINTRGSFLAQHPCSVYHLS 208
           DL   I   LPG I +L    +G R++N  G+F+   P  + HL+
Sbjct: 613 DLSDTIVMALPGEIGSL----VGLRYLNVSGTFIGALPPELLHLT 653


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,369,205
Number of Sequences: 37544
Number of extensions: 203879
Number of successful extensions: 512
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)