Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10480X
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 156 2e-39
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 156 2e-39
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 156 2e-39
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 97 2e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 90 2e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 78 1e-15
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.002
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.005
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.005
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.012
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.020
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.14
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.19
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.33
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.44
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 27 1.3
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.3
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 4.1
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 5.4
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 5.4
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.4
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 7.2
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 9.5
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 9.5
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 156 bits (379), Expect = 2e-39
Identities = 72/82 (87%), Positives = 77/82 (93%)
Frame = +3
Query: 255 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 434
LWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREH
Sbjct: 77 LWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREH 136
Query: 435 ALLAFTLGVKQLIVGVNKMDST 500
ALLA+TLGVKQLIV VNKMD+T
Sbjct: 137 ALLAYTLGVKQLIVAVNKMDTT 158
Score = 103 bits (246), Expect = 2e-23
Identities = 46/50 (92%), Positives = 48/50 (96%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEIG 178
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELG 50
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 156 bits (378), Expect = 2e-39
Identities = 71/82 (86%), Positives = 77/82 (93%)
Frame = +3
Query: 255 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 434
LWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREH
Sbjct: 77 LWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREH 136
Query: 435 ALLAFTLGVKQLIVGVNKMDST 500
ALLA+TLGVKQLIV VNKMD+T
Sbjct: 137 ALLAYTLGVKQLIVAVNKMDTT 158
Score = 103 bits (246), Expect = 2e-23
Identities = 46/50 (92%), Positives = 48/50 (96%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEIG 178
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELG 50
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 156 bits (378), Expect = 2e-39
Identities = 71/82 (86%), Positives = 77/82 (93%)
Frame = +3
Query: 255 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 434
LWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREH
Sbjct: 77 LWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREH 136
Query: 435 ALLAFTLGVKQLIVGVNKMDST 500
ALLA+TLGVKQLIV VNKMD+T
Sbjct: 137 ALLAYTLGVKQLIVAVNKMDTT 158
Score = 103 bits (246), Expect = 2e-23
Identities = 46/50 (92%), Positives = 48/50 (96%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEIG 178
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELG 50
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 96.7 bits (230), Expect = 2e-21
Identities = 42/77 (54%), Positives = 56/77 (72%)
Frame = +3
Query: 264 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 443
FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+L
Sbjct: 311 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 370
Query: 444 AFTLGVKQLIVGVNKMD 494
A T G+ L+V +NKMD
Sbjct: 371 ARTQGINHLVVVINKMD 387
Score = 64.5 bits (150), Expect = 1e-11
Identities = 27/46 (58%), Positives = 37/46 (80%)
Frame = +2
Query: 41 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEIG 178
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E G
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAG 281
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 89.8 bits (213), Expect = 2e-19
Identities = 42/77 (54%), Positives = 51/77 (66%)
Frame = +3
Query: 264 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 443
FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L
Sbjct: 250 FESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYL 309
Query: 444 AFTLGVKQLIVGVNKMD 494
LG+ +++V VNK+D
Sbjct: 310 LRALGISEIVVSVNKLD 326
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +2
Query: 41 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEIG 178
K +++VV GHVDSGKST G ++++ G I+ R+++K EA G
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSG 220
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 77.8 bits (183), Expect = 1e-15
Identities = 37/85 (43%), Positives = 55/85 (64%)
Frame = +3
Query: 261 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 440
++ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 441 LAFTLGVKQLIVGVNKMDSTEPPTV 515
LA +GVKQ++V +NK+D EP +
Sbjct: 163 LARQVGVKQIVVYINKVDMVEPDMI 187
Score = 35.1 bits (77), Expect = 0.007
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 35 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 121
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 282 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 461
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 462 KQLIVGVNKMD 494
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 23 PKMGKEKTHINIVVIGHVDSGKST 94
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 124
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 279 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 374
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 124
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 279 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 374
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.012
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 264 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 434
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 29.1 bits (62), Expect = 0.44
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 53 NIVVIGHVDSGKSTTTGHLIYKCGGI 130
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.020
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 264 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 389
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.14
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 255 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 389
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 53 NIVVIGHVDSGKSTTTGHLIYKCGGIDK 136
N VI H+D GKST + ++ G I++
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINE 87
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.19
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 279 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 389
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.33
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 291 IIDAPGHRDFIKNMITGTSQADCAVLIV 374
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.1 bits (62), Expect = 0.44
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +3
Query: 285 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 464
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 465 QLIVGVNKMD 494
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
Score = 28.7 bits (61), Expect = 0.58
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 53 NIVVIGHVDSGKSTTTGHLIYKCG 124
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 228 VKWDYNRYCLWKFETSKYYV 287
V WD R+CL KF+ YV
Sbjct: 149 VPWDVTRHCLGKFKVPNLYV 168
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 294 IDAPGHRDFIKNMITGTSQADCAVLIV 374
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 195 YLKNLYPISWASF 157
YLK LYP+ W +F
Sbjct: 759 YLKQLYPVEWRNF 771
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 5.4
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -1
Query: 532 FLKSGLTVGGSVESILFTPTMSCLTPRVKASKACSRV*PF-LEIPASNSPVPAATMSTAQ 356
FLKSG T S ++ F PT P + + V I A+ + + +ATM T
Sbjct: 32 FLKSGNTASSSSPTLQFRPTSR--YPTLSHEPVYTNVLDLSSRIDANRASIMSATMGTPP 89
Query: 355 SA 350
SA
Sbjct: 90 SA 91
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 533 FPQIWAHCRWFSGIHFVYSYDE 468
F QIWA C W+ G + S E
Sbjct: 2065 FQQIWACCLWYWGSYIDRSMQE 2086
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 338 CDHVLDEISVSRSINDGNIVLASFELPEAISIVIPLNV 225
CDH+L IS SR G + FEL I + L +
Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFELAVTIFNTVMLQL 60
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 170 PGPPSRTSRWYVCQYHHIC 114
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 201 KHYLKNLYPISWASFSNFSMVRLSIPPHL*IK*PVVVDLPESTCPMTTMLM*VF 40
K LKN + W F++F +V + P H +VDL T ML+ +F
Sbjct: 679 KESLKNFWESLWKFFTHFFIVLPTWPVH---DKDNLVDLMRDTLDFCDMLINIF 729
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 285 VTIIDAPGHRDFIKN 329
+T+ID PG DFI N
Sbjct: 89 LTVIDTPGFGDFINN 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,443
Number of Sequences: 5004
Number of extensions: 40092
Number of successful extensions: 168
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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