Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10480X
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             109   2e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          101   5e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                98   5e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 71   6e-13
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.064
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              33   0.11 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.26 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.45 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.4  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   1.4  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   7.3  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  27   9.7  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  109 bits (261), Expect = 2e-24
 Identities = 49/80 (61%), Positives = 62/80 (77%)
 Frame = +3

Query: 255 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 434
           L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQTREH
Sbjct: 5   LTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREH 64

Query: 435 ALLAFTLGVKQLIVGVNKMD 494
           A+L  +LGV QLIV +NK+D
Sbjct: 65  AILVRSLGVTQLIVAINKLD 84


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  101 bits (241), Expect = 5e-22
 Identities = 46/84 (54%), Positives = 61/84 (72%)
 Frame = +3

Query: 264 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 443
           F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276

Query: 444 AFTLGVKQLIVGVNKMDSTEPPTV 515
           A T GVK L++ VNKMD    PTV
Sbjct: 277 AKTAGVKHLVILVNKMDD---PTV 297



 Score = 31.9 bits (69), Expect = 0.34
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +2

Query: 113 YKCGGIDKRTIEKFEKEAQE 172
           Y  G +DKRT+EK+E+EA+E
Sbjct: 166 YLTGQVDKRTLEKYEREAKE 185


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +2

Query: 29  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEI 175
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 30/32 (93%), Positives = 31/32 (96%)
 Frame = +3

Query: 255 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 350
           LWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 29  LWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.064
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +3

Query: 285 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 464
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 465 QLIVGVNKMD 494
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 294 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 473
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 474 VGVNKMD 494
           +  NK+D
Sbjct: 123 ILQNKID 129


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 29  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 124
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 279 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 389
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 23/80 (28%), Positives = 33/80 (41%)
 Frame = +3

Query: 285 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 464
           +  +D PGH  F      G    D  +++VAA             QT+E    A   GV 
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTKEAISHAQAAGV- 191

Query: 465 QLIVGVNKMDSTEPPTVSPD 524
            +I  +NK+D    P  +PD
Sbjct: 192 PIIFAINKIDK---PNANPD 208


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 291 IIDAPGHRDFIKNMITGTSQADCAVLIV 374
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 285 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 389
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 44  THINIVVIGHVDSGKSTTTGHLIY 115
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 53   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 151
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 285 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 428
           +T++D PGH   IK +I G      A +I   GT   E G  ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 50  INIVVIGHVDSGKSTTTGHLIY 115
           + + V+G+VD+GKST  G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,737,935
Number of Sequences: 59808
Number of extensions: 306655
Number of successful extensions: 753
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)