Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10480X
(538 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 169 1e-42
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 169 1e-42
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 149 1e-36
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 111 2e-25
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 111 2e-25
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 106 1e-23
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 106 1e-23
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 103 6e-23
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 70 1e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 70 1e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 66 1e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 66 1e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 66 1e-11
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 43 1e-04
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 40 0.001
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 35 0.043
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.056
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 34 0.075
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.099
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.17
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.17
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.53
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.53
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 0.92
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 0.92
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.2
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 6.5
U97551-5|AAB52858.1| 169|Caenorhabditis elegans Groundhog (hedg... 27 8.6
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 169 bits (410), Expect = 1e-42
Identities = 78/85 (91%), Positives = 81/85 (95%)
Frame = +3
Query: 255 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 434
LWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREH
Sbjct: 77 LWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREH 136
Query: 435 ALLAFTLGVKQLIVGVNKMDSTEPP 509
ALLA TLGVKQLIV NKMDSTEPP
Sbjct: 137 ALLAQTLGVKQLIVACNKMDSTEPP 161
Score = 106 bits (254), Expect = 1e-23
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEIG 178
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE+G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG 50
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 169 bits (410), Expect = 1e-42
Identities = 78/85 (91%), Positives = 81/85 (95%)
Frame = +3
Query: 255 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 434
LWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREH
Sbjct: 77 LWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREH 136
Query: 435 ALLAFTLGVKQLIVGVNKMDSTEPP 509
ALLA TLGVKQLIV NKMDSTEPP
Sbjct: 137 ALLAQTLGVKQLIVACNKMDSTEPP 161
Score = 106 bits (254), Expect = 1e-23
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEIG 178
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE+G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG 50
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 149 bits (361), Expect = 1e-36
Identities = 73/90 (81%), Positives = 77/90 (85%)
Frame = +3
Query: 255 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 434
LWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREH
Sbjct: 77 LWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREH 136
Query: 435 ALLAFTLGVKQLIVGVNKMDSTEPPTVSPD 524
ALLA TLGVKQL+ S PT SPD
Sbjct: 137 ALLAQTLGVKQLV-------SLRSPTRSPD 159
Score = 106 bits (254), Expect = 1e-23
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEIG 178
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE+G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG 50
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 111 bits (268), Expect = 2e-25
Identities = 51/80 (63%), Positives = 62/80 (77%)
Frame = +3
Query: 264 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 443
FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 243 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 302
Query: 444 AFTLGVKQLIVGVNKMDSTE 503
+LGV QLIV VNK+D+ +
Sbjct: 303 LRSLGVTQLIVAVNKLDTVD 322
Score = 56.4 bits (130), Expect = 1e-08
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +2
Query: 38 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEIG 178
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA G
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNG 213
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 111 bits (268), Expect = 2e-25
Identities = 51/80 (63%), Positives = 62/80 (77%)
Frame = +3
Query: 264 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 443
FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 261 FETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALL 320
Query: 444 AFTLGVKQLIVGVNKMDSTE 503
+LGV QLIV VNK+D+ +
Sbjct: 321 LRSLGVTQLIVAVNKLDTVD 340
Score = 56.4 bits (130), Expect = 1e-08
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +2
Query: 38 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEIG 178
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA G
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNG 231
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 106 bits (254), Expect = 1e-23
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEIG 178
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE+G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG 50
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 106 bits (254), Expect = 1e-23
Identities = 48/50 (96%), Positives = 49/50 (98%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEIG 178
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQE+G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG 50
Score = 89.0 bits (211), Expect(2) = 9e-21
Identities = 38/41 (92%), Positives = 41/41 (100%)
Frame = +3
Query: 255 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 377
LWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 77 LWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 28.3 bits (60), Expect(2) = 9e-21
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 468 LIVGVNKMDSTEPP 509
L+V NKMDSTEPP
Sbjct: 114 LVVACNKMDSTEPP 127
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 103 bits (248), Expect = 6e-23
Identities = 48/84 (57%), Positives = 61/84 (72%)
Frame = +3
Query: 264 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 443
FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L
Sbjct: 182 FETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSML 241
Query: 444 AFTLGVKQLIVGVNKMDSTEPPTV 515
T GVK L++ VNKMD PTV
Sbjct: 242 VKTAGVKHLVILVNKMDD---PTV 262
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/49 (57%), Positives = 38/49 (77%)
Frame = +2
Query: 32 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEIG 178
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKG 152
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 69.7 bits (163), Expect = 1e-12
Identities = 36/69 (52%), Positives = 44/69 (63%)
Frame = +3
Query: 297 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 476
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 477 GVNKMDSTE 503
+NK D E
Sbjct: 167 FINKADLVE 175
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 41 KTHINIVVIGHVDSGKSTTT 100
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 69.7 bits (163), Expect = 1e-12
Identities = 36/69 (52%), Positives = 44/69 (63%)
Frame = +3
Query: 297 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 476
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 477 GVNKMDSTE 503
+NK D E
Sbjct: 167 FINKADLVE 175
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 41 KTHINIVVIGHVDSGKSTTT 100
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 66.5 bits (155), Expect = 1e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +3
Query: 261 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 440
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 441 LAFTLGV--KQLIVGVNKMD 494
LA +GV ++V +NK+D
Sbjct: 159 LARQVGVPLDNIVVFMNKVD 178
Score = 33.1 bits (72), Expect = 0.13
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 35 KEKTHINIVVIGHVDSGKSTTT 100
++K H+N+ IGHVD GK+T T
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLT 66
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 66.5 bits (155), Expect = 1e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +3
Query: 261 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 440
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 441 LAFTLGV--KQLIVGVNKMD 494
LA +GV ++V +NK+D
Sbjct: 160 LARQVGVPLDNIVVFMNKVD 179
Score = 33.1 bits (72), Expect = 0.13
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 35 KEKTHINIVVIGHVDSGKSTTT 100
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 66.5 bits (155), Expect = 1e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +3
Query: 261 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 440
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 441 LAFTLGV--KQLIVGVNKMD 494
LA +GV ++V +NK+D
Sbjct: 160 LARQVGVPLDNIVVFMNKVD 179
Score = 33.1 bits (72), Expect = 0.13
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 35 KEKTHINIVVIGHVDSGKSTTT 100
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 43.2 bits (97), Expect = 1e-04
Identities = 26/83 (31%), Positives = 43/83 (51%)
Frame = +3
Query: 285 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 464
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 465 QLIVGVNKMDSTEPPTVSPDLRK 533
++I+ +NK D E +S +K
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKK 149
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 50 INIVVIGHVDSGKSTTT 100
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/70 (40%), Positives = 33/70 (47%)
Frame = +3
Query: 285 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 464
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 465 QLIVGVNKMD 494
QL+V VNK+D
Sbjct: 258 QLVVAVNKID 267
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.7 bits (76), Expect = 0.043
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +3
Query: 279 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 458
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 459 VKQLIVGVNKMD 494
+ Q+I +NK+D
Sbjct: 155 I-QIIPVINKID 165
Score = 32.3 bits (70), Expect = 0.23
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 53 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 169
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.056
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 53 NIVVIGHVDSGKSTTTGHLIYKCGGI 130
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 33.9 bits (74), Expect = 0.075
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +3
Query: 282 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 461
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 462 KQLIVGVNKMD 494
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.099
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 487 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 359
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 53 NIVVIGHVDSGKSTTTGHLIYKCGGID 133
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 28.3 bits (60), Expect = 3.7
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = +3
Query: 285 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 464
+ IID PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 465 QLIVGVNKMD 494
I VNKMD
Sbjct: 166 PFICFVNKMD 175
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 124
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 279 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 389
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 29 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 124
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 279 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 389
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 5 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 115
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 5 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 115
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.3 bits (65), Expect = 0.92
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 270 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 389
+ Y + IID PGH +F M AD V++V A G
Sbjct: 198 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.3 bits (65), Expect = 0.92
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 270 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 389
+ Y + IID PGH +F M AD V++V A G
Sbjct: 73 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 291 IIDAPGHRDFIKNMITGTSQADCAVLIV 374
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 50 INIVVIGHVDSGKSTTT 100
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 285 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 380
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 285 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 374
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 285 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 374
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -3
Query: 470 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 312
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 311 VSRSINDGNI 282
S S +D I
Sbjct: 84 FSGSKSDAEI 93
>U97551-5|AAB52858.1| 169|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 4 protein.
Length = 169
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 237 DYNRYCLWKFETSKYYVTIIDAPGHRD 317
+YN + KFET+ Y + + + P H D
Sbjct: 98 NYNGSSVCKFETNSYTMAVYETPEHYD 124
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,734,433
Number of Sequences: 27780
Number of extensions: 227817
Number of successful extensions: 722
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -