Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10476
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 143 3e-35
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 143 3e-35
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 143 3e-35
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 29 0.79
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 1.4
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 26 5.6
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 26 7.4
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 9.7
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 25 9.7
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 143 bits (346), Expect = 3e-35
Identities = 59/79 (74%), Positives = 72/79 (91%)
Frame = +1
Query: 508 SGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGT 687
+GGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R +
Sbjct: 169 AGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQS 228
Query: 688 SAGRKVGLIAARKTGRIRG 744
+ G+KVGLIAAR+TG +RG
Sbjct: 229 APGQKVGLIAARRTGLLRG 247
Score = 130 bits (313), Expect = 3e-31
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = +2
Query: 257 QFVYCGKKATLEVGNVMPVGAMPEGTIVCNLXEKMGDRGRLARASGNFATVIGHNPDAKR 436
QFVYCGK A L VGNV+PVG MPEGTI+ N+ EK GDRG L R+SGN+ ++GH+ D +
Sbjct: 85 QFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGK 144
Query: 437 TRVKLPSGAKKVLPSSNRGMVGIV 508
TRVKLPSGAKKV+PSS RG+VGIV
Sbjct: 145 TRVKLPSGAKKVVPSSARGVVGIV 168
Score = 118 bits (283), Expect = 1e-27
Identities = 54/81 (66%), Positives = 68/81 (83%)
Frame = +1
Query: 4 MGRVIRAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 183
MGRVIRAQR+ +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 184 VHFRDPYKFKTRKELFIAPEG 246
V FR+PY ++T E F+A EG
Sbjct: 60 VAFRNPYHYRTDVETFVATEG 80
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 143 bits (346), Expect = 3e-35
Identities = 59/79 (74%), Positives = 72/79 (91%)
Frame = +1
Query: 508 SGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGT 687
+GGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R +
Sbjct: 169 AGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQS 228
Query: 688 SAGRKVGLIAARKTGRIRG 744
+ G+KVGLIAAR+TG +RG
Sbjct: 229 APGQKVGLIAARRTGLLRG 247
Score = 130 bits (313), Expect = 3e-31
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = +2
Query: 257 QFVYCGKKATLEVGNVMPVGAMPEGTIVCNLXEKMGDRGRLARASGNFATVIGHNPDAKR 436
QFVYCGK A L VGNV+PVG MPEGTI+ N+ EK GDRG L R+SGN+ ++GH+ D +
Sbjct: 85 QFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGK 144
Query: 437 TRVKLPSGAKKVLPSSNRGMVGIV 508
TRVKLPSGAKKV+PSS RG+VGIV
Sbjct: 145 TRVKLPSGAKKVVPSSARGVVGIV 168
Score = 118 bits (283), Expect = 1e-27
Identities = 54/81 (66%), Positives = 68/81 (83%)
Frame = +1
Query: 4 MGRVIRAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 183
MGRVIRAQR+ +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 184 VHFRDPYKFKTRKELFIAPEG 246
V FR+PY ++T E F+A EG
Sbjct: 60 VAFRNPYHYRTDVETFVATEG 80
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 143 bits (346), Expect = 3e-35
Identities = 59/79 (74%), Positives = 72/79 (91%)
Frame = +1
Query: 508 SGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGT 687
+GGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R +
Sbjct: 169 AGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQS 228
Query: 688 SAGRKVGLIAARKTGRIRG 744
+ G+KVGLIAAR+TG +RG
Sbjct: 229 APGQKVGLIAARRTGLLRG 247
Score = 130 bits (313), Expect = 3e-31
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = +2
Query: 257 QFVYCGKKATLEVGNVMPVGAMPEGTIVCNLXEKMGDRGRLARASGNFATVIGHNPDAKR 436
QFVYCGK A L VGNV+PVG MPEGTI+ N+ EK GDRG L R+SGN+ ++GH+ D +
Sbjct: 85 QFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGK 144
Query: 437 TRVKLPSGAKKVLPSSNRGMVGIV 508
TRVKLPSGAKKV+PSS RG+VGIV
Sbjct: 145 TRVKLPSGAKKVVPSSARGVVGIV 168
Score = 118 bits (283), Expect = 1e-27
Identities = 54/81 (66%), Positives = 68/81 (83%)
Frame = +1
Query: 4 MGRVIRAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 183
MGRVIRAQR+ +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 184 VHFRDPYKFKTRKELFIAPEG 246
V FR+PY ++T E F+A EG
Sbjct: 60 VAFRNPYHYRTDVETFVATEG 80
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 589 PYVRGVAMNPVEHPHGGGNHQHIG 660
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 29.1 bits (62), Expect = 0.79
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 534 RFVNTSTSRTIPTM-PLLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 394
RF+N +T+ + PLLLD + S +V +ASG+ P+ KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 523 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 615
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 25 QRRGAGSVFVSHTKKRKGAPKLRSLD 102
+RRG+ +HTK+ K APK D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 203 TSSRQGRSSSLLPKALHSQFVYCGKKATLE 292
T+S LL +L F YCG+K TL+
Sbjct: 77 TNSYNAMVMDLLGPSLEDLFCYCGRKFTLK 106
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 498 SVLFWRWTY*QTYFESWKGIPQVQG 572
S+ WR+ Y T+ SW +P VQG
Sbjct: 116 SLSIWRFLYWLTFVLSWIILPFVQG 140
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 732 SGLASSNKTNFATSRCSSLDSGSLTYMLMVTTTVR 628
SG+ SN T+ A S S++ SGS + +VT R
Sbjct: 421 SGIVQSNLTSAAMSNNSAIRSGSAASVPVVTINGR 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,424,040
Number of Sequences: 5004
Number of extensions: 75078
Number of successful extensions: 219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -