Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10476
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      147   8e-36
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    36   0.051
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443...    31   1.1  
12_02_0917 + 24281029-24281137,24281998-24282095,24282196-242823...    30   1.9  
02_04_0503 + 23526699-23527112                                         30   2.5  
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   3.3  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   4.4  
06_02_0282 + 13720419-13720985                                         29   5.8  
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656...    29   5.8  
02_05_1127 + 34292894-34293284,34293948-34295443                       28   7.7  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  147 bits (357), Expect = 8e-36
 Identities = 63/79 (79%), Positives = 71/79 (89%)
 Frame = +1

Query: 508 SGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGT 687
           +GGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R  
Sbjct: 170 AGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDA 229

Query: 688 SAGRKVGLIAARKTGRIRG 744
             G+KVGLIAAR+TGR+RG
Sbjct: 230 PPGQKVGLIAARRTGRLRG 248



 Score =  127 bits (307), Expect = 9e-30
 Identities = 58/81 (71%), Positives = 68/81 (83%)
 Frame = +1

Query: 4   MGRVIRAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 183
           MGRVIRAQR+GAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 184 VHFRDPYKFKTRKELFIAPEG 246
           V FR P+++K +KELF+A EG
Sbjct: 61  VTFRHPFRYKHQKELFVAAEG 81



 Score =  120 bits (290), Expect = 1e-27
 Identities = 51/84 (60%), Positives = 68/84 (80%)
 Frame = +2

Query: 257 QFVYCGKKATLEVGNVMPVGAMPEGTIVCNLXEKMGDRGRLARASGNFATVIGHNPDAKR 436
           QFVYCG++ATL +GNV+P+ ++PEG +VCN+   +GDRG  ARASG++A VI HNPD   
Sbjct: 86  QFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGT 145

Query: 437 TRVKLPSGAKKVLPSSNRGMVGIV 508
           +R+KLPSGAKK++PSS R M+G V
Sbjct: 146 SRIKLPSGAKKIVPSSCRAMIGQV 169


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 35.5 bits (78), Expect = 0.051
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 507 FWRWTY*QTYFESWKGIPQVQG 572
           FW WTY  T+F SW  +P +QG
Sbjct: 69  FWSWTYWSTFFLSWSIVPTLQG 90


>02_05_0812 +
           31942591-31942758,31943415-31943491,31944169-31944327,
           31944559-31944772,31944849-31944935,31945022-31945161,
           31945380-31945460,31945948-31946012,31946219-31946394,
           31947212-31947342,31947438-31947525,31947671-31947884,
           31948206-31948312,31948456-31948953
          Length = 734

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 507 FWRWTY*QTYFESWKGIPQVQG 572
           FW W+Y  T+  +W  +P +QG
Sbjct: 69  FWSWSYWSTFILTWAVVPTIQG 90


>12_02_0917 +
           24281029-24281137,24281998-24282095,24282196-24282372,
           24282490-24282590,24282684-24282759,24282843-24282902,
           24282999-24283195,24283296-24283392,24283478-24283564,
           24283925-24283983,24284535-24284626,24284706-24284783,
           24284891-24285051,24285303-24285530
          Length = 539

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 527 SIRPPPEQYRPCLCCLMAEPSWLQTVAL 444
           ++ PP EQ+     C+ + PSW+Q  AL
Sbjct: 15  AVFPPHEQFHHLAYCVHSNPSWVQVAAL 42


>02_04_0503 + 23526699-23527112
          Length = 137

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 463 QEGSAIKQQRHGRYCSGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 642
           +EG  ++  +H R+C  G      +   GR   + K+   C P     A +P  HP GGG
Sbjct: 61  EEGPKLEHDKHERHCMAGSAATSNLGSEGRGGKRPKILVVCSPQ----APSP-PHPVGGG 115


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 388 LWKLRHCDWT 417
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 419 CVQSQWRSFQRHVPDDLYHPFSLXDCTQWY 330
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>06_02_0282 + 13720419-13720985
          Length = 188

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 625 HPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARKTG 732
           +PHGGG H  +      +R    G +   +AAR+ G
Sbjct: 47  NPHGGGGHAPLPPPQNPRRPNLVGAEEVAVAARRRG 82


>01_01_0841 -
           6564029-6564348,6564654-6564686,6564793-6565450,
           6565530-6565694,6565789-6565878,6565982-6566182,
           6566525-6566737,6566835-6567077
          Length = 640

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 601 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 708
           G+A N    PHG  NHQH       ++ T++  K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558


>02_05_1127 + 34292894-34293284,34293948-34295443
          Length = 628

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 321 IAPTGITFPTSRVAFFPQ*TNWLCRAFGSNEELLPCLELVWIAE 190
           + P  I FP S +AF  +   W+  AF  N   LP +E  W  E
Sbjct: 336 VPPKWIPFP-STIAFRRREFGWIAGAFKPNASGLPDVERFWRTE 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,686,953
Number of Sequences: 37544
Number of extensions: 555629
Number of successful extensions: 1647
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)