Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10476
(817 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 156 2e-38
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 130 1e-30
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 39 0.006
SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.64
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 31 1.1
SB_36232| Best HMM Match : PTS_EIIA_1 (HMM E-Value=8.1) 29 4.5
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 29 4.5
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06) 28 7.9
SB_12208| Best HMM Match : ig (HMM E-Value=6.9e-30) 28 7.9
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 156 bits (379), Expect = 2e-38
Identities = 68/81 (83%), Positives = 74/81 (91%)
Frame = +1
Query: 508 SGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGT 687
+GGGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG STV+R T
Sbjct: 170 AGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDT 229
Query: 688 SAGRKVGLIAARKTGRIRGGK 750
AGRKVGLIAAR+TG +RGG+
Sbjct: 230 PAGRKVGLIAARRTGLLRGGQ 250
Score = 142 bits (344), Expect = 3e-34
Identities = 65/81 (80%), Positives = 71/81 (87%)
Frame = +1
Query: 4 MGRVIRAQRRGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 183
MGRVIR QR+GAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 184 VHFRDPYKFKTRKELFIAPEG 246
V FRDPY++K RKELF+A EG
Sbjct: 61 VVFRDPYRYKLRKELFVATEG 81
Score = 138 bits (333), Expect = 7e-33
Identities = 61/84 (72%), Positives = 72/84 (85%)
Frame = +2
Query: 257 QFVYCGKKATLEVGNVMPVGAMPEGTIVCNLXEKMGDRGRLARASGNFATVIGHNPDAKR 436
QF+YCGKKA L++GN +PVG MPEGTI+ ++ EK GDRGRLAR SGN+ATVI HN + KR
Sbjct: 86 QFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKR 145
Query: 437 TRVKLPSGAKKVLPSSNRGMVGIV 508
TRVKLPSG KKV+PSSNR +VGIV
Sbjct: 146 TRVKLPSGIKKVIPSSNRALVGIV 169
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 130 bits (315), Expect = 1e-30
Identities = 57/80 (71%), Positives = 68/80 (85%)
Frame = +2
Query: 257 QFVYCGKKATLEVGNVMPVGAMPEGTIVCNLXEKMGDRGRLARASGNFATVIGHNPDAKR 436
QF+YCGKKA L++GN +PVG MPEGTI+ ++ EK GDRGRLAR SGN+ATVI HN + KR
Sbjct: 44 QFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKR 103
Query: 437 TRVKLPSGAKKVLPSSNRGM 496
TRVKLPSG KKV+PSSNR +
Sbjct: 104 TRVKLPSGIKKVIPSSNRAL 123
Score = 73.7 bits (173), Expect = 2e-13
Identities = 32/39 (82%), Positives = 36/39 (92%)
Frame = +1
Query: 130 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEG 246
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEG 39
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 38.7 bits (86), Expect = 0.006
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +2
Query: 281 ATLEVGNVMPVGAMPEGTIVCNLXEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 460
A L+ G+ P+ +P GT+V N+ G +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 461 AKKVLPSSNRGMVGIVLEVD 520
+K + S VG V ++
Sbjct: 168 VEKEVSSKCLASVGRVSNIE 187
>SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 31.9 bits (69), Expect = 0.64
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -3
Query: 758 VSVLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 633
V VL P + P+LR +RP LRP P+L L W PP
Sbjct: 410 VGVLHPMLRPMLRPMLRPMLRPMLRPMLR-PMLQYKLWCQPP 450
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 576 FDLVLVVCPSSFQNRFVNT--STSRTIPTMPLLLDGRTFLAPDGSFT 442
F L V PSS QN F + + + T + L+LD TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159
>SB_36232| Best HMM Match : PTS_EIIA_1 (HMM E-Value=8.1)
Length = 175
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 422 PDAKRTRVKLPSGAKKV---LPSSNRGMVGIVLEVDVLTNLF*KLEGHTTSTRSNVTAG 589
P+A T+V +PS A +P S+ G V++ ++L N+ + GH NVT G
Sbjct: 5 PNAGPTKVDIPSNAPTPGGEVPLSSEPEEGEVVDGEILGNVAPNVNGHEEIGSLNVTQG 63
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 422 PDAKRTRVKLPSGAKKV---LPSSNRGMVGIVLEVDVLTNLF*KLEGHTTSTRSNVTAG 589
P+A T+V +PS A +P S+ G V++ ++L N+ + GH NVT G
Sbjct: 1191 PNAGPTKVDIPSNAPTPGGEVPLSSEPEEGEVVDGEILGNVAPNVNGHEEIGSLNVTQG 1249
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 377 LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 505
+AR +G+F T + D RTR P KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513
>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 602 PRTYGQQLRLTLYLWYALPAFKIGLSIRPPPEQYRPCLC 486
P + R +++L+Y+ P+ ++G R PP Y P C
Sbjct: 39 PEARSSKQRYSIFLYYSGPSSRVGRFFRTPP-GYGPVKC 76
>SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 752 VLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 633
+L P + P+LR +RP LRP P+L + W PP
Sbjct: 1 MLRPMLRPMLRPMLRPMLRPMLRPMLQYKL-----WCQPP 35
>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
Length = 167
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 397 LRHCDWTQS*C*AYK-SKATVWSQEGSAIKQQRHGRYCSGGGRIDKPILKAGRAYHKYKV 573
L +CD Q C + S+ ++QQ+ R C+ G + K G+ Y
Sbjct: 91 LENCDHIQESCDQTRESREHARKNCDQVVEQQQQQRMCANCGLAKIRLSKCGKCLKVYYC 150
Query: 574 KRNC 585
RNC
Sbjct: 151 SRNC 154
>SB_12208| Best HMM Match : ig (HMM E-Value=6.9e-30)
Length = 474
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -3
Query: 347 DCTQWYPQA*LQQASHFQLQELLSFHNKQIGCVEPSGAMKSSFLVLNL----YGSRKCTT 180
D T+W + + +Q+ FH + + E G+M+S+ ++ + +G KCT
Sbjct: 258 DTTKW-----TRNGTEASVQQSQRFHTRDLYSYE--GSMESTLIIKGVRIQDFGCYKCTV 310
Query: 179 AKGAPLPGSWIISL 138
A L SW+ L
Sbjct: 311 ATSNGLGSSWVCLL 324
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,691,820
Number of Sequences: 59808
Number of extensions: 618852
Number of successful extensions: 1548
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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