Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10473
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    29   0.64 
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    27   2.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.4  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    26   5.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   7.9  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   7.9  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   7.9  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   7.9  

>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +1

Query: 7   ITYCDNKFIENFIKNIWQTA*IFNKTSIYIFGDGSCGRKVNQQREIQWRKCIAIFTVFTN 186
           I  CD       + ++ QT   F  TS Y+  +   G K   + +I W   I+I  + T 
Sbjct: 200 IKLCDFGVSGELVNSVAQT---FVGTSTYMSPERIRGGKYTVKSDI-WSLGISIIELATQ 255

Query: 187 ---WSYSDGDQNIPGCDIMDCI 243
              WS+S+ D +I   D++ CI
Sbjct: 256 ELPWSFSNIDDSIGILDLLHCI 277


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 32  SRIL*KIYGRQRKYSTKHLSIYSVMD--LAAEKLINKERFNGE 154
           SR   K YG+ R+Y  K + I++ +D    A K  N E FN +
Sbjct: 3   SRSKVKTYGKNRRYINKDIEIWASLDERPCALKPRNIENFNNQ 45


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 267 CPFVGNIID--AIHNITPRNILITIRITP-IGKYSKNCNAFSPL 145
           C F+   I    IHN+TP N++I   + P +  + K+ +++ P+
Sbjct: 731 CGFLNCFIQKKGIHNVTPNNLVIFKNLFPEVLSFVKSNHSYDPI 774


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 366 VRNQHTTS-WVSLSFELHIDTKSPTSQSS*HVTDCPFVGNI-IDA 238
           V   H+ S   S S   HI + S  S  + +  D PFVGNI +DA
Sbjct: 52  VEGTHSASVHPSTSSTSHISSPSAFSVQNPNPNDAPFVGNIGLDA 96


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 249 IIDAIHNITPRNILITIRITPIG--KYSKNCNAFSPLNLSLLINFS 118
           I D +  +   NI  T  +   G  K +K+ + F+PLNL   +N+S
Sbjct: 578 ITDCLSFLLEHNIFNTFLVYNEGIVKLNKDFDDFTPLNLLKCVNYS 623


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 426 FQTYGTKDMCS-CKRIDTCHIVRNQHTTSWVSLSFELHIDT 307
           FQT+ T  +    K  D C       +TS   ++FEL+ DT
Sbjct: 226 FQTFDTSQLVVLAKSRDRCKDTEQNKSTSTQPITFELNDDT 266


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 428 DGSCHHFSHRRWV*RTPHNFLK 493
           +GS +H+SHR W+ RT    LK
Sbjct: 553 NGSSNHYSHRVWL-RTKAEILK 573


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 273 SHVNYFGLLDFWCLCEAQRTKRP 341
           SH  Y  L D + LC   R KRP
Sbjct: 12  SHRRYNPLTDSYVLCSPHRAKRP 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,110
Number of Sequences: 5004
Number of extensions: 74362
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)