Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10473
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0790 + 25253363-25254136,25259037-25259897 37 0.013
05_07_0074 - 27509124-27509199,27509613-27512143 32 0.38
03_02_0843 - 11690176-11690820,11690930-11690961,11691115-11691235 31 1.1
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 29 2.6
04_04_0881 + 29055724-29059197 29 2.6
02_02_0129 + 7055896-7056135,7056404-7056771,7056816-7056928,705... 29 2.6
07_03_1152 + 24392765-24392908,24393682-24393899,24394340-243944... 29 3.5
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473... 28 6.1
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 28 6.1
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 28 8.1
07_01_0780 + 6047375-6047494,6047603-6047713,6047804-6047926,604... 28 8.1
06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489 28 8.1
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 28 8.1
>01_05_0790 + 25253363-25254136,25259037-25259897
Length = 544
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +2
Query: 158 ALQFLLYLPIGVILMVIRIFLGVIL 232
AL F L+LP+GVIL VIRI +G++L
Sbjct: 298 ALAFFLFLPLGVILSVIRISIGILL 322
>05_07_0074 - 27509124-27509199,27509613-27512143
Length = 868
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 346 CSVLVANYVTCIDSLAAAHVFGTISLKRWKLPPFFASTLGVKNASQFSKKLHFSVCQQSL 525
C +LV + +D+ A HV GTI R K P F L + + + K+ S+ + L
Sbjct: 556 CEILVTAQFSPLDTKVAQHVKGTIRSLRKKTDPLFFEPLDIASYGLYIDKVDESMWRMDL 615
>03_02_0843 - 11690176-11690820,11690930-11690961,11691115-11691235
Length = 265
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 527 HRLCWHTEKCSFLENCEAFFTPNVDAKNG 441
HRLCWH FL P+ D +NG
Sbjct: 17 HRLCWHQPLHLFLHEGSRAMEPDADERNG 45
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 354 VGCELCDMYRFSCSCTCLWYHKFEKMEVAT---IFRIDVGCKE 473
V C+ CD F SC WY K ++ T + R GCK+
Sbjct: 449 VQCKNCDNRYFCNSCINKWYSGLSKKDIKTRCPVCRGSCGCKQ 491
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 427 FSNLWYQRHVQLQENRYMSHSSQPTHYILGLFVL*ASH 314
FS+LW RH+ L N + Y+ L VL ASH
Sbjct: 557 FSSLWSLRHLNLSVNSFTGSMPATYGYLPSLQVLSASH 594
>02_02_0129 +
7055896-7056135,7056404-7056771,7056816-7056928,
7057014-7057118,7057283-7057860,7057889-7058346,
7058430-7058681,7058762-7058872,7058960-7059020,
7059122-7059214,7059292-7059477
Length = 854
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 213 YSWV*YYGLHQLYCQQMGSQSHVNYFGLLDFWCLCEAQRTKRPK 344
Y W+ + LH +YC+ + VNY G+ WC+ + K+ K
Sbjct: 594 YVWLDFSYLHAIYCR---DKMDVNYVGV---WCMMQYMDAKKKK 631
>07_03_1152 +
24392765-24392908,24393682-24393899,24394340-24394454,
24394605-24394694,24394857-24395015,24395462-24395581,
24396173-24396283,24396531-24396615,24397439-24397575
Length = 392
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -1
Query: 456 RCEKWWQLPSFQTYGTKDMCSCKRIDTCHIVRNQHT---TSWVSLSFELHIDTKSPTSQS 286
+ E W + ++ D+ CK I H HT +W+S+SF++H+ S +
Sbjct: 282 KVESWLEDLLWERKLDMDIYRCKGILHVHNSDQVHTLQVATWISISFKIHLVVASTDIEG 341
Query: 285 S*HVTDC 265
H C
Sbjct: 342 FVHPVPC 348
>09_04_0435 -
17545879-17546605,17546721-17546782,17547123-17547335,
17547506-17547590,17547904-17548061,17548174-17548294,
17548765-17548927,17548973-17549097,17550800-17550888,
17550970-17551636,17552671-17552717,17553506-17553862
Length = 937
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 234 GLHQLYCQQMGSQSHVNYFGLLDFWC-LCEAQR 329
GLH C + SQ+ V Y G WC +CE ++
Sbjct: 410 GLHSRNCNLILSQNCVTYHGSKKEWCFMCEFEK 442
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 298 WTFGVYVKLKGQRDPRCSVLVANYVTCIDSLAAA 399
W F + +K +G +D C V +Y T + L A
Sbjct: 254 WDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVA 287
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 655 VARVKARSTVMATGCTWLLIWNGQSVKRNTALPFVGPLSGCIN 527
V + R+ AT W L W+G + R++A+ L+ CI+
Sbjct: 38 VLALHLRAAATATAARWSLAWSG-AASRSSAIEVAQELAECIS 79
>07_01_0780 +
6047375-6047494,6047603-6047713,6047804-6047926,
6048035-6048168,6048273-6049551
Length = 588
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 270 DCPFVGNIIDAIHNITPRNILITIRITPIGKYSKNCNA 157
DC V I I ++ P +L T+R TP GK C+A
Sbjct: 9 DCEKVYVAISPIQSLCPPMLLWTLRNTPPGKTYSCCSA 46
>06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489
Length = 282
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 528 LIQPESGPTNGKAVLRFTDWPFQIKSHVQPVAITVERAFTRATVQRRQYS 677
++Q E G + K + D+PF+I + +IT++R T++ Y+
Sbjct: 93 IVQSEEGAASAKQIDLPEDFPFEIIDNPGDQSITLKREIAGETIKATVYT 142
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 649 RVKARSTVMATGCTWLLIWNGQSVKRNTALPFVGPLSG 536
R++ V+ G T L+W S+ R +P +GP G
Sbjct: 667 RIRCGQFVLLFGVTSCLLWTLWSISRAIIVPLMGPEEG 704
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,567,605
Number of Sequences: 37544
Number of extensions: 477129
Number of successful extensions: 1095
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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