Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10473
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                31   1.2  
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)               30   2.0  
SB_59542| Best HMM Match : Pyrophosphatase (HMM E-Value=1.9)           29   4.7  
SB_8968| Best HMM Match : zf-LSD1 (HMM E-Value=0.49)                   29   4.7  
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      28   6.2  
SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)                    28   6.2  
SB_31800| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_42051| Best HMM Match : EGF_CA (HMM E-Value=6.9e-35)                28   8.3  
SB_41245| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)               28   8.3  

>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1814

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
 Frame = -2

Query: 515  WHTEKCSFLE--NCEAFFTP----NVDAKNGGNFHLF 423
            WHT  C  +E   C+ +F P    N D  N  NFH+F
Sbjct: 1168 WHTRICMRVELYGCKEYFKPIGMENHDISNENNFHIF 1204


>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
          Length = 540

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +3

Query: 252 CQQMGSQSHVNYFGLLDFWCLCEAQRTKRPKM*CVGCELCDMYRFSCSCTCLWYHKFEKM 431
           C+   S+SHV+ F +  F C C +       M        D++  +CSC C  YH    M
Sbjct: 459 CRCFPSRSHVDVFPIA-FSCRCVSHHVLM-SMCFPSRAHVDVFLIACSCRCFPYHVLMSM 516


>SB_59542| Best HMM Match : Pyrophosphatase (HMM E-Value=1.9)
          Length = 149

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 121 KVNQQREIQWRKCIAIFTVFTNWSYSDGD 207
           KV+  RE+   K  AIF +FT++ Y D D
Sbjct: 28  KVHDMREVCENKYDAIFNLFTSFGYFDDD 56


>SB_8968| Best HMM Match : zf-LSD1 (HMM E-Value=0.49)
          Length = 379

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 186 IGKYSKNCNAFSPL--NLSLLINFS-AARSITEYIDRCFVEYLRCLPYIFYKILDE 28
           IG+Y  + N       N++ L N+  AA++  E       E L CL  +F+K+ DE
Sbjct: 300 IGRYRASSNVLKAFMDNIAGLENYHIAAKNFQELSKNLIPETLLCLDKVFFKLDDE 355


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = +3

Query: 240 HQLYCQQMGSQSHVNYFGLLDFWCLCEAQRTKRPKM*CVGCELCDMYRFSCSCTCLWYHK 419
           H L      S++HV+ F +    C C   R     M    C   D++  +CSC C+ +  
Sbjct: 767 HVLMSMCFPSRAHVDVFPITCS-CRCVPHRVLM-SMCSPSCAHVDVFPIACSCRCVPHRV 824

Query: 420 FEKMEVATIFRIDV 461
              M   +   +DV
Sbjct: 825 LMSMYSTSRAHVDV 838



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +3

Query: 240 HQLYCQQMGSQSHVNYFGLLDFWCLCEA-QRTKRPKM*CVGCELCDMYRFSCSCTCLWYH 416
           H L      S++HV+ F +    C C          M    C   D++   CSC C+ YH
Sbjct: 571 HVLKSMCFPSRAHVDVFPIA---CSCRCVPHYLLMSMCSPSCAHVDVFPIGCSCRCVSYH 627


>SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)
          Length = 519

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 267 SQSHVNYFGLLDFWCLCEAQRTKRPKM*CVGCELCDMYRFSCSCTCLWYHKFEKMEVATI 446
           S++HV+ F L+   C C   R     M        D++  +CSC C+ +H F  M   + 
Sbjct: 91  SRAHVDVF-LIACSCRCFPHRGLM-SMCFPSRAHVDVFHIACSCRCVPHHVFMSMCPPSR 148

Query: 447 FRIDV 461
            ++DV
Sbjct: 149 AQVDV 153



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +3

Query: 240 HQLYCQQMGSQSHVNYFGLLDFWCLCEAQRTKRPKM*CVGCELCDMYRFSCSCTCLWYHK 419
           H L      S++HV  F  +   C C + R   P M    C   D++  +CSC C+ +  
Sbjct: 26  HVLMSMCSTSRAHVYVF-YIACSCRCVSDRVLMP-MCSPLCVHVDVFPIACSCRCVSHRG 83

Query: 420 FEKMEVATIFRIDV 461
              M   +   +DV
Sbjct: 84  LMSMCFLSRAHVDV 97


>SB_31800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 598 IWNGQSVKRNTALPFVGPLSGCINTGFVGTQRNVA 494
           +W+  S+ +  + P + P + C+ TG    Q N+A
Sbjct: 33  LWSMTSLSQAASQPSIQPAAICLGTGLQSAQNNIA 67


>SB_42051| Best HMM Match : EGF_CA (HMM E-Value=6.9e-35)
          Length = 398

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 195 ITPIGKYSKNC--NAFSPLNLSLLINFSAARSITEY 94
           + P+GKY KNC     S L++ LLI+ S   S  E+
Sbjct: 328 LCPVGKYGKNCTYTCKSDLDVGLLIDSSGFVSGQEF 363


>SB_41245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 351 CVGCELCDMYRFSCS-CTCLWYHKFEKMEVATIFRIDVGCKERLTIF*KATFLCVPTKPV 527
           C+      ++ + CS C CLW  +++ + +  +   D GC   + ++ +   L +   PV
Sbjct: 35  CLSMGAVPVFVYGCSTCVCLWV-QYQYLSMGAVPVFDYGCSTCVCLWVQYRSLSMGAVPV 93

Query: 528 LI 533
            +
Sbjct: 94  FV 95


>SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)
          Length = 291

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 273 TDCPFVGNIIDAIHNITPRNILITIRITPIGK 178
           TD P +  IID + N + ++  IT++  P+GK
Sbjct: 180 TDNPALNEIIDNLQNASYKDEEITVQNVPVGK 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,914,309
Number of Sequences: 59808
Number of extensions: 553874
Number of successful extensions: 1430
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)