Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10473
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23648-6|AAA28032.2|  390|Caenorhabditis elegans Hypothetical pr...    38   0.007
AC006642-3|AAF39832.2|  410|Caenorhabditis elegans Acyltransfera...    33   0.26 
AC006642-2|AAF39831.1|  617|Caenorhabditis elegans Acyltransfera...    33   0.26 
Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z46934-6|CAA87045.3|  371|Caenorhabditis elegans Hypothetical pr...    28   5.5  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   5.5  
Z50806-1|CAA90689.1|  179|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>L23648-6|AAA28032.2|  390|Caenorhabditis elegans Hypothetical
           protein F44B9.5 protein.
          Length = 390

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 522 PVLIQPESGPTNG-KAVLRFTDWPFQIKSHVQPVAITVERAF 644
           P+L  PE   T+G KA+++F  W F++ S VQPV++ V R +
Sbjct: 161 PLLAFPEGIITSGEKALIKFNTWCFEVSSVVQPVSVRVWRPY 202



 Score = 36.7 bits (81), Expect = 0.016
 Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
 Frame = +2

Query: 107 DLAAEKLINKERFNGENALQF-LLYLPIGVILMVIRIFLGVILWIASIILPTNG--QSVT 277
           DL  E L +++R     A  F ++Y P+G+I+++IR+FLG   +I + +L  +   +  T
Sbjct: 14  DLRIEDLFHQKRNEDTIAKIFSIIYAPVGLIILLIRVFLGFHTFIVACLLRKSAALRMHT 73

Query: 278 C*LLW-LVGLLVSM*SSKDKETQDVVCWLRTM*HVSILLQLHMSLV 412
             ++  ++G++V     +D E+  V+C      HVSIL  L + ++
Sbjct: 74  LRIMCSILGIVVEKSGHRD-ESARVLC----ANHVSILDHLAVDIL 114



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 289 LACWTFGVYVKLKGQRDPRCSVLVANYVTCIDSLAAAHVFGTISLKRWKLP 441
           + C   G+ V+  G RD    VL AN+V+ +D LA   +   +    W +P
Sbjct: 76  IMCSILGIVVEKSGHRDESARVLCANHVSILDHLAVDILTPCLLPSVWDIP 126


>AC006642-3|AAF39832.2|  410|Caenorhabditis elegans
           Acyltransferase-like protein 4,isoform b protein.
          Length = 410

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 468 KERLTIF*KATFLCV-PTK-PVLIQPESGPTNGKAVLRFTDWPFQIKSHVQPVAITVERA 641
           K+RL +  K    C  P K P+LI PE    N  +V+ F    F+I + + P+A+  +  
Sbjct: 175 KDRLVVAQKLKEHCTNPDKLPILIFPEGTCINNTSVMMFKKGSFEIGTTIYPIAMKYDSR 234

Query: 642 F 644
           F
Sbjct: 235 F 235


>AC006642-2|AAF39831.1|  617|Caenorhabditis elegans
           Acyltransferase-like protein 4,isoform a protein.
          Length = 617

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 468 KERLTIF*KATFLCV-PTK-PVLIQPESGPTNGKAVLRFTDWPFQIKSHVQPVAITVERA 641
           K+RL +  K    C  P K P+LI PE    N  +V+ F    F+I + + P+A+  +  
Sbjct: 385 KDRLVVAQKLKEHCTNPDKLPILIFPEGTCINNTSVMMFKKGSFEIGTTIYPIAMKYDSR 444

Query: 642 F 644
           F
Sbjct: 445 F 445


>Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical
           protein R07E3.5b protein.
          Length = 455

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 522 PVLIQPESGPTNGKAVLRFTDWPFQIKSHVQPVAITVERAFTRA 653
           P++I PE    N  +V+ F    F+I S + P+A+  +   T A
Sbjct: 255 PIIIFPEGTCINNTSVMMFKKGSFEIGSTIYPIAVKYDTRLTDA 298


>Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical
           protein R07E3.5a protein.
          Length = 512

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 522 PVLIQPESGPTNGKAVLRFTDWPFQIKSHVQPVAITVERAFTRA 653
           P++I PE    N  +V+ F    F+I S + P+A+  +   T A
Sbjct: 312 PIIIFPEGTCINNTSVMMFKKGSFEIGSTIYPIAVKYDTRLTDA 355


>Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical
           protein C07A9.8 protein.
          Length = 453

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 513 PTKPVLIQPESGPTNGKAVLRFTDWPFQI 599
           P   V+ +P+  P     +  FTDWPF+I
Sbjct: 7   PKCVVIEEPDDVPVKPPKIFDFTDWPFEI 35


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 503  SLCANKACVDTTRKWTHER*SGVTFHRLAIPD*KPCAAG 619
            +LC N+ C+D+ +K  H    G     L  P    CA G
Sbjct: 2839 NLCTNRRCIDSAKKCNHIDDCGDGSDELDCPSAVACAEG 2877


>Z46934-6|CAA87045.3|  371|Caenorhabditis elegans Hypothetical
           protein ZK1320.7 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 240 HQLYCQQMGSQSHVNYF--GLLDFWCLCEAQRTKRPKM*CVGCELCDMY 380
           H L   Q+  ++  NYF   L D++C  +   T         CELCD++
Sbjct: 180 HSLGIVQIAQKNGKNYFVKRLFDYFCNGDTPSTSSEPETLTFCELCDVF 228


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 503  SLCANKACVDTTRKWTHER*SGVTFHRLAIPD*KPCAAG 619
            +LC N+ C+D+ +K  H    G     L  P    CA G
Sbjct: 2839 NLCTNRRCIDSAKKCNHIDDCGDGSDELDCPSAVACAEG 2877


>Z50806-1|CAA90689.1|  179|Caenorhabditis elegans Hypothetical
           protein M79.3 protein.
          Length = 179

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 522 PVLIQPESGPTNGKAVLRFTDWPFQIKSHVQPVAI 626
           PVL+ PE   +N   VL+F    F+   ++ PVAI
Sbjct: 9   PVLLFPEGYCSNNSKVLQFRKAIFEENVNIYPVAI 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,891,177
Number of Sequences: 27780
Number of extensions: 433421
Number of successful extensions: 1147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)