Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10472
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    29   0.46 
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   2.5  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   4.3  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   5.7  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   10.0 

>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 384 YIL*KYHLLNIEYNIIEKLCRDIRLHGTLCRYI--TTILWINEYTENISNTE 235
           Y+L   H LN++YNI+  L   +  H   C Y+   T L +  Y + IS  E
Sbjct: 39  YLLAYSHFLNLDYNIVYDLLDRVISH-VPCTYLFARTSLILGRYKQGISAVE 89


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -1

Query: 215 SIICEIHL-KFIFLEI-FYTNTLYSEKSIKLY*EISLC 108
           S+ C+  L  F+F+ I ++T  LY++ S+  +  +SLC
Sbjct: 56  SLCCDFPLFNFLFIAIPYFTEILYNDSSLLWFLFVSLC 93


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -2

Query: 589 ATSTG*VSFC*STLRNFYQDLKCNSKQNEVQTEIIQILKHY-DNEI*HYYNRPLNK*LLI 413
           A S G +SFC   +R+ YQ L+       +  ++  I+K   ++     Y RPL + +++
Sbjct: 367 AISRGVLSFCDQAIRDLYQILEVEFHPLSICKKLQPIIKRLAESNDTAQYIRPLQQ-VIL 425

Query: 412 TIAFAMTNLLY 380
           T  F   + +Y
Sbjct: 426 TRLFQQLSQVY 436


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 492 KLFKYLNTMTMKFSITITVLLINDY 418
           +LF+YL   T  +   +T LL NDY
Sbjct: 524 ELFEYLQEKTTYYKNNLTTLLNNDY 548


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -2

Query: 187 LYSLKYFTQIHYILRNQ*NYIERSVYASYKNLQSMLSMFATKHLICL 47
           L+SL  F  IH I  +  NYIE  VY S +    ML  F++  L+ +
Sbjct: 96  LWSLHSFEDIHEIFISLGNYIE-GVYDSEEEAPHML--FSSSSLLSI 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,729
Number of Sequences: 5004
Number of extensions: 47288
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)