Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10472
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0738 - 6218730-6220173,6221969-6223056                           28   5.9  
09_02_0366 + 7941550-7942161,7942230-7942775                           28   7.8  
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589...    28   7.8  

>11_01_0738 - 6218730-6220173,6221969-6223056
          Length = 843

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 522 VIVSKMKCKPKLFKYLNTMTMKFSITITVLLIN 424
           V+++K  C+ K F Y N  +   S+ + VLL+N
Sbjct: 560 VLLNKDPCRYKAFFYCNAASFMASVALIVLLMN 592


>09_02_0366 + 7941550-7942161,7942230-7942775
          Length = 385

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -1

Query: 92  TKYAFYVCNKTFNLLSRIQLYVY 24
           T+++  VCNKTFN  + +Q++++
Sbjct: 186 TQFSCAVCNKTFNRFNNMQMHMW 208


>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
            5890540-5890710,5890840-5891007,5891139-5891234,
            5891777-5891839,5891949-5892114,5892207-5892274,
            5892646-5892789,5893111-5893176,5893329-5893520,
            5894567-5894657,5895241-5895329,5895521-5895583,
            5895698-5895823,5895902-5895991,5896059-5896181,
            5896503-5896619,5896704-5896904,5897643-5897723,
            5897897-5897977,5898083-5898184,5898264-5898488,
            5898571-5898726,5898798-5899010,5899306-5899455,
            5900082-5900204,5900299-5900364,5900555-5900620,
            5900686-5900817,5900891-5900965,5901355-5901438,
            5901516-5901668,5901741-5901806,5902044-5902205,
            5902272-5902388,5902495-5902566,5902702-5902761,
            5902869-5902985,5904131-5904430,5904518-5904622,
            5905710-5905775,5905853-5906297,5906399-5906567,
            5906684-5906736,5906819-5906925
          Length = 1981

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 538  YQDLKCNSKQNEVQTEIIQILKHYDNEI 455
            YQDL   S  N +QT+   +L H DN +
Sbjct: 1273 YQDLYRFSHFNPIQTQAFHVLYHSDNNV 1300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,745,417
Number of Sequences: 37544
Number of extensions: 225538
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)