Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10472
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)                   28   7.9  

>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 651 KYFNYFGSTKCATSNRHFTNRLLLQG 574
           KY N   +TKCATSNR F N  + +G
Sbjct: 367 KYSNGIDATKCATSNRCFPNPCINRG 392


>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
          Length = 1962

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 311 YTAHYVGTLQLSSG*TNTQKTYLTQKLPGNETSIICE 201
           +T ++VG  +LS   +NT  TYL     G ++  I E
Sbjct: 70  HTVNFVGVQKLSFDGSNTDYTYLAHNFKGYDSYFILE 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,519,668
Number of Sequences: 59808
Number of extensions: 312514
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)