Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10471
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43840| Best HMM Match : NDK (HMM E-Value=0)                        116   1e-26
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   3e-08
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)                   30   0.74 
SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.74 
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   5.2  
SB_51778| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.31)            27   5.2  
SB_20561| Best HMM Match : 7tm_1 (HMM E-Value=0.2)                     27   5.2  
SB_20055| Best HMM Match : NDK (HMM E-Value=0.65)                      27   6.9  
SB_10818| Best HMM Match : PMP1_2 (HMM E-Value=2.3)                    27   9.1  

>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
          Length = 786

 Score =  116 bits (278), Expect = 1e-26
 Identities = 55/91 (60%), Positives = 66/91 (72%)
 Frame = +1

Query: 10  QQHYSDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRKMLGATNPADSQPGTIRGDL 189
           ++HY  LA   F+ GL KYMS  PV  MVWEGL VVKT R MLG T+PA S PGTIRGD 
Sbjct: 683 RKHYESLAKLKFYDGLCKYMSQTPVCAMVWEGLGVVKTARVMLGETDPAKSLPGTIRGDF 742

Query: 190 *IQVGRNIIHGSDSVESAKKEMASGLRTKKL 282
            I +GRNIIHGSD+VE+AK+E+A   +  +L
Sbjct: 743 SIHIGRNIIHGSDAVETAKEEIALWFKDDEL 773



 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 33/68 (48%), Positives = 41/68 (60%)
 Frame = +1

Query: 1   ELLQQHYSDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRKMLGATNPADSQPGTIR 180
           E L++HY+DLA  PF+PGLVK+MSSGPVV M                    ADS+PGTIR
Sbjct: 168 EHLKKHYADLAHLPFYPGLVKFMSSGPVVAM--------------------ADSKPGTIR 207

Query: 181 GDL*IQVG 204
           GD  + +G
Sbjct: 208 GDFCVHIG 215



 Score = 35.9 bits (79), Expect = 0.015
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 258 LWFTDKEVVGWIPANENWVYE 320
           LWF D E+V W P N  W+YE
Sbjct: 766 LWFKDDELVDWTPCNNPWMYE 786


>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
 Frame = +1

Query: 1   ELLQQHYSDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRKMLGATNPADSQ---PG 171
           EL  Q Y +   + FF GL  YMSSGP + MV    + V   R ++G  +P  ++   P 
Sbjct: 713 ELASQFYHEHEGKDFFEGLTDYMSSGPTMFMVLSKEDAVSGWRSLMGPVDPEQAKEMAPE 772

Query: 172 TIRGDL*IQVGRNIIHGSDSVESAKK 249
           +IR  L   V +N++HG    E A K
Sbjct: 773 SIRAALGKDVMKNVVHGPSDPEKAGK 798



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
 Frame = +1

Query: 1   ELLQQHYSDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRKMLG---ATNPADSQPG 171
           E  ++ YS+   + FF  LV  MSSGP++ +     + ++  R MLG        D  P 
Sbjct: 578 EQAEEFYSEHKDQEFFDTLVTNMSSGPMMALCLAREDAIEGWRGMLGPKEVEKAKDEAPE 637

Query: 172 TIRGDL*IQVGR-NIIHGSDSVESAKKEM 255
           ++R    ++    N +HGSD+ E+A+KE+
Sbjct: 638 SLRAQFQVEDSPINPLHGSDTAENAEKEI 666


>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1373

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 128 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 36
           R VF T+   HT+ T G E +YF RP K+ R
Sbjct: 194 RAVFNTMVVLHTVLTKGEETLYFERPIKRPR 224


>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
          Length = 908

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 128 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 36
           R VF T+   HT+ T G + +YF RP ++ R
Sbjct: 759 RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 789


>SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 128 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 36
           R VF T+   HT+ T G + +YF RP ++ R
Sbjct: 46  RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 76


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 277  KLWAGYLQMKTGFMSKFILICIYCLVLMIYVK-HSVI 384
            K+  GY      ++  FILIC  C V + + K HS++
Sbjct: 1162 KMKRGYFGDSWNWVEVFILICALCAVFLQFFKSHSIL 1198


>SB_51778| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.31)
          Length = 239

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 311 PVFICRYPAHNFFVRKPEAISFLADSTLSEPWMML 207
           P+F+C     N  +  PE+ +FL   T   PW +L
Sbjct: 140 PIFVCEGCLCNEGLLSPESDTFLIKVTSYAPWFLL 174


>SB_20561| Best HMM Match : 7tm_1 (HMM E-Value=0.2)
          Length = 310

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 311 PVFICRYPAHNFFVRKPEAISFLADSTLSEPWMML 207
           P+F+C     N  +  PE+ +FL   T   PW +L
Sbjct: 140 PIFVCEGCLCNEGLLSPESDTFLIKVTSYAPWFLL 174


>SB_20055| Best HMM Match : NDK (HMM E-Value=0.65)
          Length = 150

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 205 RNIIHGSDSVESAKKEMASGL 267
           +N  HGSDS ESA++ M   L
Sbjct: 4   KNAAHGSDSTESAERSMVEEL 24


>SB_10818| Best HMM Match : PMP1_2 (HMM E-Value=2.3)
          Length = 414

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/48 (20%), Positives = 27/48 (56%)
 Frame = +1

Query: 226 DSVESAKKEMASGLRTKKLWAGYLQMKTGFMSKFILICIYCLVLMIYV 369
           D V+  +  +A    T   +  + +  +GF++ ++++C  C++L ++V
Sbjct: 246 DDVDVCRARLAE---TFDAFHAFREFSSGFIALYLIVCTVCILLELHV 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,130,476
Number of Sequences: 59808
Number of extensions: 276491
Number of successful extensions: 639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)